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Major capsid protein L1 (Fragment)

 A0A1S6L7I8_9PAPI        Unreviewed;       126 AA.
A0A1S6L7I8;
10-MAY-2017, integrated into UniProtKB/TrEMBL.
10-MAY-2017, sequence version 1.
20-DEC-2017, entry version 6.
RecName: Full=Major capsid protein L1 {ECO:0000256|RuleBase:RU361248, ECO:0000256|SAAS:SAAS00105241};
Flags: Fragment;
Name=L1 {ECO:0000256|RuleBase:RU361248};
Human papillomavirus.
Viruses; dsDNA viruses, no RNA stage; Papillomaviridae;
unclassified Papillomaviridae.
NCBI_TaxID=10566 {ECO:0000313|EMBL:AQT33336.1};
[1] {ECO:0000313|EMBL:AQT33336.1}
NUCLEOTIDE SEQUENCE.
STRAIN=EP05 major capsid protein L1 gene
{ECO:0000313|EMBL:AQT33336.1};
Bolatti E.M., Chouhy D., Hosnjak L., Casal P.E., Kocjan B.J.,
Bottai H., Stella E.J., Sanchez A., Fernandez-Bussy R., Poljak M.,
Giri A.A.;
"Prevalence, persistence and associated factors of human
papillomavirus infection of sun-exposed healthy skin of
immunocompetent individuals along three climatic seasons and
identification of HPV209, a novel Betapapillomavirus.";
Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Forms an icosahedral capsid with a T=7 symmetry and a 50
nm diameter. The capsid is composed of 72 pentamers linked to each
other by disulfide bonds and associated with L2 proteins. Binds to
heparan sulfate proteoglycans on cell surface of basal layer
keratinocytes to provide initial virion attachment. This binding
mediates a conformational change in the virus capsid that
facilitates efficient infection. The virion enters the host cell
via endocytosis. During virus trafficking, L1 protein dissociates
from the viral DNA and the genomic DNA is released to the host
nucleus. The virion assembly takes place within the cell nucleus.
Encapsulates the genomic DNA together with protein L2.
{ECO:0000256|RuleBase:RU361248, ECO:0000256|SAAS:SAAS00514925}.
-!- SUBUNIT: Self-assembles into homopentamers. The capsid has an
icosahedral symmetry and consists of 72 capsomers, with each
capsomer being a pentamer of L1. Interacts with the minor capsid
protein L2; this interaction is necessary for viral genome
encapsidation. {ECO:0000256|RuleBase:RU361248}.
-!- SUBCELLULAR LOCATION: Host nucleus
{ECO:0000256|SAAS:SAAS00559273}. Virion
{ECO:0000256|RuleBase:RU361248, ECO:0000256|SAAS:SAAS00559275}.
-!- SIMILARITY: Belongs to the papillomaviridae L1 protein family.
{ECO:0000256|RuleBase:RU361248, ECO:0000256|SAAS:SAAS00578944}.
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EMBL; KY242582; AQT33336.1; -; Genomic_DNA.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0039620; C:T=7 icosahedral viral capsid; IEA:UniProtKB-KW.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0075509; P:endocytosis involved in viral entry into host cell; IEA:UniProtKB-KW.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-UniRule.
Gene3D; 2.60.175.20; -; 1.
InterPro; IPR002210; Capsid_L1_Papillomavir.
InterPro; IPR036973; Capsid_L1_sf_Papillomavir.
InterPro; IPR011222; dsDNA_vir_gr_I_capsid.
Pfam; PF00500; Late_protein_L1; 1.
PRINTS; PR00865; HPVCAPSIDL1.
SUPFAM; SSF88648; SSF88648; 1.
3: Inferred from homology;
Capsid protein {ECO:0000256|RuleBase:RU361248,
ECO:0000256|SAAS:SAAS00445708};
Disulfide bond {ECO:0000256|SAAS:SAAS00527207};
Host nucleus {ECO:0000256|SAAS:SAAS00527206};
Host-virus interaction {ECO:0000256|RuleBase:RU361248,
ECO:0000256|SAAS:SAAS00058257};
Late protein {ECO:0000256|RuleBase:RU361248};
T=7 icosahedral capsid protein {ECO:0000256|RuleBase:RU361248,
ECO:0000256|SAAS:SAAS00445708};
Viral attachment to host cell {ECO:0000256|RuleBase:RU361248,
ECO:0000256|SAAS:SAAS00058257};
Viral penetration into host cytoplasm {ECO:0000256|SAAS:SAAS00527205};
Virion {ECO:0000256|RuleBase:RU361248, ECO:0000256|SAAS:SAAS00058257,
ECO:0000256|SAAS:SAAS00445708};
Virus endocytosis by host {ECO:0000256|SAAS:SAAS00527205};
Virus entry into host cell {ECO:0000256|RuleBase:RU361248,
ECO:0000256|SAAS:SAAS00058257, ECO:0000256|SAAS:SAAS00527205}.
NON_TER 126 126 {ECO:0000313|EMBL:AQT33336.1}.
SEQUENCE 126 AA; 13966 MW; CFC13CE04E37BE2F CRC64;
MPDPNKFALV DPTIYNSEHE RLVWKLRGLE IGRGGPLGVA CTGNPLFNKY GDTENPNKYP
TKQSRDNRQN VAVDPKQTQL FMIGCSSPIG AHWDLAEFCP EHNGQPGECP PIQLVNSVIQ
DGDMCE


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Pathways :
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair
WP1673: Naphthalene and anthracene degradation
WP1675: Nitrogen metabolism
WP1676: Non-homologous end-joining
WP1678: Nucleotide excision repair

Related Genes :
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[UCHL1] Ubiquitin carboxyl-terminal hydrolase isozyme L1 (UCH-L1) (EC 3.4.19.12) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) (Ubiquitin thioesterase L1)
[L1CAM CAML1 MIC5] Neural cell adhesion molecule L1 (N-CAM-L1) (NCAM-L1) (CD antigen CD171)
[Uchl1] Ubiquitin carboxyl-terminal hydrolase isozyme L1 (UCH-L1) (EC 3.4.19.12) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) (Ubiquitin thioesterase L1)
[tesA apeA pldC b0494 JW0483] Thioesterase 1/protease 1/lysophospholipase L1 (TAP) (Acyl-CoA thioesterase 1) (TESA) (EC 3.1.2.2) (Acyl-CoA thioesterase I) (Arylesterase) (EC 3.1.1.2) (Lysophospholipase L1) (EC 3.1.1.5) (Oleoyl-[acyl-carrier-protein] hydrolase) (EC 3.1.2.14) (Phospholipid degradation C) (Pldc) (Protease 1) (EC 3.4.21.-) (Protease I) (Thioesterase I/protease I) (TEP-I)
[] Metallo-beta-lactamase L1 type 3 (EC 3.5.2.6) (B3 metallo-beta-lactamase) (Beta-lactamase type III) (Metallo-beta-lactamase L1 type III) (Penicillinase)
[PKD2L1 PKD2L PKDL TRPP3] Polycystic kidney disease 2-like 1 protein (Polycystin-2 homolog) (Polycystin-2L1) (Polycystin-L) (Polycystin-L1)
[NFE2L1 HBZ17 NRF1 TCF11] Endoplasmic reticulum membrane sensor NFE2L1 (Locus control region-factor 1) (LCR-F1) (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) (Protein NRF1, p120 form) (Transcription factor 11) (TCF-11) [Cleaved into: Transcription factor NRF1 (Protein NRF1, p110 form)]
[Nfe2l1 Nrf1] Endoplasmic reticulum membrane sensor NFE2L1 (Locus control region-factor 1) (LCR-F1) (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) [Cleaved into: Transcription factor NRF1]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[NFE2L1 NRF1] Endoplasmic reticulum membrane sensor NFE2L1 (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) [Cleaved into: Transcription factor NRF1]
[NFE2L1 NRF1] Endoplasmic reticulum membrane sensor NFE2L1 (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) [Cleaved into: Transcription factor NRF1]
[ZFP36L1 BERG36 BRF1 ERF1 RNF162B TIS11B] mRNA decay activator protein ZFP36L1 (Butyrate response factor 1) (EGF-response factor 1) (ERF-1) (TPA-induced sequence 11b) (Zinc finger protein 36, C3H1 type-like 1) (ZFP36-like 1)
[CDK11B CDC2L1 CDK11 PITSLREA PK58] Cyclin-dependent kinase 11B (EC 2.7.11.22) (Cell division cycle 2-like protein kinase 1) (CLK-1) (Cell division protein kinase 11B) (Galactosyltransferase-associated protein kinase p58/GTA) (PITSLRE serine/threonine-protein kinase CDC2L1) (p58 CLK-1)
[NFE2L1 NRF1 RCJMB04_7g14] Endoplasmic reticulum membrane sensor NFE2L1 (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) [Cleaved into: Transcription factor NRF1]
[rplA b3984 JW3947] 50S ribosomal protein L1 (Large ribosomal subunit protein uL1)
[tesA c0615] Thioesterase 1/protease 1/lysophospholipase L1 (TAP) (Acyl-CoA thioesterase 1) (TESA) (EC 3.1.2.2) (Acyl-CoA thioesterase I) (Arylesterase) (EC 3.1.1.2) (Lysophospholipase L1) (EC 3.1.1.5) (Oleoyl-[acyl-carrier-protein] hydrolase) (EC 3.1.2.14) (Phospholipid degradation C) (Pldc) (Protease 1) (EC 3.4.21.-) (Protease I) (Thioesterase I/protease I) (TEP-I)
[Zfp36l1 Brf1 Tis11b] mRNA decay activator protein ZFP36L1 (Butyrate response factor 1) (TPA-induced sequence 11b) (Zinc finger protein 36, C3H1 type-like 1) (ZFP36-like 1)
[L1RE1 LRE1] LINE-1 retrotransposable element ORF1 protein (L1ORF1p) (LINE retrotransposable element 1) (LINE1 retrotransposable element 1)
[Creb3l1 Oasis] Cyclic AMP-responsive element-binding protein 3-like protein 1 (cAMP-responsive element-binding protein 3-like protein 1) (Old astrocyte specifically-induced substance) (OASIS) [Cleaved into: Processed cyclic AMP-responsive element-binding protein 3-like protein 1 (Oasis N-terminal fragment) (OA-N)]
[PKD1L1 UNQ5785/PRO19563] Polycystic kidney disease protein 1-like 1 (PC1-like 1 protein) (Polycystin-1L1)
[CCL4L1 CCL4L LAG1 SCYA4L1; CCL4L2 CCL4L SCYA4L2] C-C motif chemokine 4-like (Lymphocyte activation gene 1 protein) (LAG-1) (Macrophage inflammatory protein 1-beta) (MIP-1-beta) (Monocyte adherence-induced protein 5-alpha) (Small-inducible cytokine A4-like)
[CCL3L1 D17S1718 G0S19-2 SCYA3L1; CCL3L3] C-C motif chemokine 3-like 1 (G0/G1 switch regulatory protein 19-2) (LD78-beta(1-70)) (PAT 464.2) (Small-inducible cytokine A3-like 1) (Tonsillar lymphocyte LD78 beta protein) [Cleaved into: LD78-beta(3-70); LD78-beta(5-70)]
[YME1L1 FTSH1 YME1L UNQ1868/PRO4304] ATP-dependent zinc metalloprotease YME1L1 (EC 3.4.24.-) (ATP-dependent metalloprotease FtsH1) (Meg-4) (Presenilin-associated metalloprotease) (PAMP) (YME1-like protein 1)
[BCL2L1 BCL2L BCLX] Bcl-2-like protein 1 (Bcl2-L-1) (Apoptosis regulator Bcl-X)

Bibliography :
[28959092] Naturally occurring capsid protein variants L1 of human papillomavirus genotype 16 in Morocco.
[28267627] Stop codon mutagenesis for homogenous expression of human papillomavirus L1 protein in Escherichia coli.
[26401038] The U4 Antibody Epitope on Human Papillomavirus 16 Identified by Cryo-electron Microscopy.
[24840327] Serum antibodies and DNA indicate a high prevalence of equine papillomavirus 2 (EcPV2) among horses in Switzerland.
[23372715] Human papillomavirus infection in a male population attending a sexually transmitted infection service.
[19835152] [Expression, purification and immunogenicity analysis of HPV type 18 virus-like particles from Escherichia coli].
[16749998] [Study on the frequency of human papillomavirus type 6 and type 11 infection and L1 gene expression of the virus in biopsy samples of pointed condyloma patients].
[16583140] Inhibitory cis-element-mediated decay of human papillomavirus type 16 L1-transcript in undifferentiated cells.
[2838555] Human papillomavirus 8-L1 immune serum: a new diagnostic possibility for Epidermodysplasia verruciformis-specific HPVs.