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Mast/stem cell growth factor receptor-related protein Kit (EC 2.7.10.1) (Kit-related kinase 1) (xKrk1) (Tyrosine-protein kinase kit)

 KIT_XENLA               Reviewed;         954 AA.
Q91909;
05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
18-SEP-2019, entry version 109.
RecName: Full=Mast/stem cell growth factor receptor-related protein Kit;
EC=2.7.10.1;
AltName: Full=Kit-related kinase 1;
Short=xKrk1;
AltName: Full=Tyrosine-protein kinase kit;
Flags: Precursor;
Name=kit; Synonyms=krk1;
Xenopus laevis (African clawed frog).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus;
Xenopus.
NCBI_TaxID=8355;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND DEVELOPMENTAL STAGE.
PubMed=7619732; DOI=10.1016/0925-4773(94)00338-n;
Baker C.V.H., Sharpe C.R., Torpey N.P., Heasman J., Wylie C.C.;
"A Xenopus c-kit-related receptor tyrosine kinase expressed in
migrating stem cells of the lateral line system.";
Mech. Dev. 50:217-228(1995).
-!- FUNCTION: Tyrosine-protein kinase that acts as cell-surface
receptor for the cytokine kitlg/scf and plays an essential role in
the regulation of cell survival and proliferation, hematopoiesis,
stem cell maintenance, gametogenesis, mast cell development,
migration and function, and in melanogenesis. {ECO:0000250}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-
tyrosyl-[protein]; Xref=Rhea:RHEA:10596, Rhea:RHEA-COMP:10136,
Rhea:RHEA-COMP:10137, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
ChEBI:CHEBI:46858, ChEBI:CHEBI:82620, ChEBI:CHEBI:456216;
EC=2.7.10.1; Evidence={ECO:0000255|PROSITE-ProRule:PRU10028};
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass
type I membrane protein {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed in a migratory stem cell population.
-!- DEVELOPMENTAL STAGE: During embryogenesis, maternal transcripts
levels are very low through cleavage and blastula stages. Zygotic
transcripts are first detected in the early gastrula at stage 10.
Transcripts levels increase through tailbud and tadpole stages. At
stages 31/32, expression is seen at the surface of the embryo in a
line ventral to the posterior edge of the optic cup. At stages
33/34, two shorts lines of cells exist running ventrally from the
anterior edge of the otic vesicle. At stages 35/36, expression is
seen in cells near the cement gland and in a patch of cells
located posterior to the gill arches, and just beneath or within
the inner layer of the epidermis. At stages 37/38, expression
forms a ribbon on either side of the embryo. At stages 40, a
second line runs caudally along the flank of the embryo. By stage
42, extension occurs and a line is observed ventro-caudally around
the anus. {ECO:0000269|PubMed:7619732}.
-!- PTM: Ubiquitinated. Rapidly ubiquitinated after
autophosphorylation induced by kitlg/scf binding, leading to
internalization and degradation. {ECO:0000250}.
-!- PTM: Autophosphorylated on tyrosine residues. Phosphorylated
tyrosine residues are important for interaction with specific
binding partners (By similarity). {ECO:0000250}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein
kinase family. CSF-1/PDGF receptor subfamily.
{ECO:0000255|PROSITE-ProRule:PRU00159}.
-----------------------------------------------------------------------
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EMBL; Z48770; CAA88688.1; -; mRNA.
PIR; I51703; I51703.
RefSeq; NP_001079048.1; NM_001085579.1.
SMR; Q91909; -.
PRIDE; Q91909; -.
GeneID; 373579; -.
KEGG; xla:373579; -.
CTD; 373579; -.
Xenbase; XB-GENE-6253062; kit.
KO; K05091; -.
OrthoDB; 236292at2759; -.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0019955; F:cytokine binding; IEA:InterPro.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0004714; F:transmembrane receptor protein tyrosine kinase activity; IEA:UniProtKB-EC.
GO; GO:0038093; P:Fc receptor signaling pathway; IEA:InterPro.
GO; GO:0038109; P:Kit signaling pathway; IEA:InterPro.
Gene3D; 2.60.40.10; -; 5.
InterPro; IPR007110; Ig-like_dom.
InterPro; IPR036179; Ig-like_dom_sf.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR003599; Ig_sub.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR027263; SCGF_receptor.
InterPro; IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
InterPro; IPR008266; Tyr_kinase_AS.
InterPro; IPR020635; Tyr_kinase_cat_dom.
InterPro; IPR001824; Tyr_kinase_rcpt_3_CS.
Pfam; PF07714; Pkinase_Tyr; 1.
PIRSF; PIRSF500951; SCGF_recepter; 1.
SMART; SM00409; IG; 4.
SMART; SM00219; TyrKc; 1.
SUPFAM; SSF48726; SSF48726; 5.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS50835; IG_LIKE; 2.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00109; PROTEIN_KINASE_TYR; 1.
PROSITE; PS00240; RECEPTOR_TYR_KIN_III; 1.
2: Evidence at transcript level;
ATP-binding; Cell membrane; Disulfide bond; Glycoprotein;
Immunoglobulin domain; Kinase; Magnesium; Membrane; Metal-binding;
Nucleotide-binding; Phosphoprotein; Receptor; Repeat; Signal;
Transferase; Transmembrane; Transmembrane helix;
Tyrosine-protein kinase; Ubl conjugation.
SIGNAL 1 19 {ECO:0000255}.
CHAIN 20 954 Mast/stem cell growth factor receptor-
related protein Kit.
/FTId=PRO_0000248274.
TOPO_DOM 20 512 Extracellular. {ECO:0000255}.
TRANSMEM 513 533 Helical. {ECO:0000255}.
TOPO_DOM 534 954 Cytoplasmic. {ECO:0000255}.
DOMAIN 21 109 Ig-like C2-type 1.
DOMAIN 118 200 Ig-like C2-type 2.
DOMAIN 207 299 Ig-like C2-type 3.
DOMAIN 308 401 Ig-like C2-type 4.
DOMAIN 404 499 Ig-like C2-type 5.
DOMAIN 577 912 Protein kinase. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
NP_BIND 584 591 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
NP_BIND 659 665 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
ACT_SITE 776 776 Proton acceptor. {ECO:0000255|PROSITE-
ProRule:PRU00159, ECO:0000255|PROSITE-
ProRule:PRU10028}.
METAL 556 556 Magnesium. {ECO:0000250}.
METAL 781 781 Magnesium. {ECO:0000250}.
METAL 794 794 Magnesium. {ECO:0000250}.
BINDING 611 611 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
BINDING 780 780 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
MOD_RES 556 556 Phosphotyrosine; by autocatalysis.
{ECO:0000250}.
MOD_RES 558 558 Phosphotyrosine; by autocatalysis.
{ECO:0000250}.
MOD_RES 691 691 Phosphotyrosine; by autocatalysis.
{ECO:0000250}.
MOD_RES 708 708 Phosphotyrosine; by autocatalysis.
{ECO:0000250}.
MOD_RES 807 807 Phosphotyrosine; by autocatalysis.
{ECO:0000250}.
CARBOHYD 70 70 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 101 101 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 155 155 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 184 184 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 263 263 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 291 291 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 305 305 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 311 311 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 343 343 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 348 348 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 458 458 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 478 478 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 42 93 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 133 181 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 147 178 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 228 281 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 419 483 {ECO:0000255|PROSITE-ProRule:PRU00114}.
SEQUENCE 954 AA; 106860 MW; 9748845CBE0B537D CRC64;
MSWTYLLMLL FLLPYTGDAV PKINDGEDRV TVNVGDKVSL ECRDAHLVTL AFQKSGLMKK
PRDLKSRPLN NSETDQFFVI IKADLRHIGR YICTNTETQE NTSVSLFVKD PARPFLDIPF
IDVTEGADTV GMCFPTDPDM DIAIEKCDGS PLPENFTFTT DIEAGITIKT VQLAFDSCYV
CSGNKSGTVK KSSTFSIHVK PVPKKVPTVF LSKSRQLVKT GEPFEVTCAV LDVFSTVKAQ
WLDVKEGVTK QANFRSSNVF SYNLTLKSDG VPYSESRTFT CQAENAIGQV NATFTLDVID
VGYVNLTVLE NTTISVNAGD NLVLKVYIDA YPHPDDGVWT YFNETLLNTS DHYVATKDEG
NNRYVSELHL IRLKGTEKGV YTFYTTNSDD DASVSFNIQV KTRPEILIAE RTSEGTLQCV
ATGFPVPAIQ WYFCPGSEQR CTDYPPLSPV NEKFIQENSS LGRIVVESTI DVNDLKKNGT
VQCVASNEVE SAYSVFSFAI KEKLRTHTLF TPLLIGFIAA AGLMCIAVAV LMYKYLQKPK
YEIQWKVVEE INGNNYVYID PTQLPYDNKW EFPRDRLCFG KILGAGAFGK VVEATAYGLL
KEDSRLTVAV KMLKPSAHST EREALMSELK VLSYLGHHKN IVNLLGACTV GGPTLVITEY
CCYGDLLNYL RRKRDSFICP KFEDNSEAAL YKNLLNTRDM GCEGMSEYID MKPAVSYVVP
TKTDKRRSGS FGDQDVSVSI PEEDDLALDT EDLINFSYQV AQGMNFLASK NCIHRDLAAR
NILLTHGRIT KICDFGLARD IRNDSNYVVK GNARLPVKWM APESIFHCVY TFESDVWSYG
ILLWEIFSLG SSPYPRIPVD SKFYKMIKDG YRMMSPECAP LEMYEIMRSC WNSDPLKRPT
FKQIVQMVEQ QLSDSKGNTP LPYPVSHVPL DHAVRINSVG SSTSSQPLLT NSDR


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[psbX] Photosystem II reaction center X protein
[ndhA] NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1)
[KK1_045969] 40S ribosomal protein SA
[KK1_006657] Uncharacterized protein
[ndhF] NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 7.1.1.-) (NADH-plastoquinone oxidoreductase subunit 5) (Fragment)
[KK1_031928] Tyrosine N-monooxygenase
[] UDP-glycosyltransferase homolog (Fragment)
[ndhA] NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1)
[KK1_005898] Secologanin synthase
[ndhD] NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4)
[psbH] Photosystem II reaction center protein H (PSII-H)
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[petB] Cytochrome b6
[ARD1] 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) (Acireductone dioxygenase (Fe(2+)-requiring)) (ARD) (Fe-ARD)
[COB] Cytochrome b (Fragment)
[ndhF] NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 7.1.1.-) (NADH-plastoquinone oxidoreductase subunit 5)
[ndhF] NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 7.1.1.-) (NADH-plastoquinone oxidoreductase subunit 5) (Fragment)
[atpF] ATP synthase subunit b, chloroplastic (ATP synthase F(0) sector subunit b) (ATPase subunit I)
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[g.33360] 4-alpha-glucanotransferase (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (Fragment)
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Bibliography :