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Multifunctional fusion protein [Includes: Endoribonuclease YbeY (EC 3.1.-.-); GTPase Era]

 A0A133YHB6_9FIRM        Unreviewed;       561 AA.
A0A133YHB6;
08-JUN-2016, integrated into UniProtKB/TrEMBL.
08-JUN-2016, sequence version 1.
13-FEB-2019, entry version 22.
RecName: Full=Multifunctional fusion protein {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|HAMAP-Rule:MF_00367};
Includes:
RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009};
EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};
Includes:
RecName: Full=GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367};
Name=era {ECO:0000256|HAMAP-Rule:MF_00367};
Synonyms=ybeY {ECO:0000256|HAMAP-Rule:MF_00009};
ORFNames=HMPREF1872_00269 {ECO:0000313|EMBL:KXB42581.1};
Clostridiales bacterium KA00274.
Bacteria; Firmicutes; Clostridia; Clostridiales.
NCBI_TaxID=1497955 {ECO:0000313|EMBL:KXB42581.1};
[1] {ECO:0000313|EMBL:KXB42581.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=KA00274 {ECO:0000313|EMBL:KXB42581.1};
Oliw E.H.;
Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: An essential GTPase that binds both GDP and GTP, with
rapid nucleotide exchange. Plays a role in 16S rRNA processing and
30S ribosomal subunit biogenesis and possibly also in cell cycle
regulation and energy metabolism. {ECO:0000256|HAMAP-
Rule:MF_00367}.
-!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
in late-stage 70S ribosome quality control and in maturation of
the 3' terminus of the 16S rRNA. {ECO:0000256|HAMAP-
Rule:MF_00009}.
-!- COFACTOR:
Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
Evidence={ECO:0000256|HAMAP-Rule:MF_00009};
Note=Binds 1 zinc ion. {ECO:0000256|HAMAP-Rule:MF_00009};
-!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00337156}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00367}.
Cell membrane {ECO:0000256|HAMAP-Rule:MF_00367}; Peripheral
membrane protein {ECO:0000256|HAMAP-Rule:MF_00367}.
-!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-
like GTPase superfamily. Era GTPase family. {ECO:0000256|HAMAP-
Rule:MF_00367, ECO:0000256|RuleBase:RU003761,
ECO:0000256|SAAS:SAAS00858963}.
-!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
{ECO:0000256|HAMAP-Rule:MF_00009}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:KXB42581.1}.
-----------------------------------------------------------------------
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EMBL; LSCV01000002; KXB42581.1; -; Genomic_DNA.
RefSeq; WP_066712740.1; NZ_KQ959565.1.
EnsemblBacteria; KXB42581; KXB42581; HMPREF1872_00269.
PATRIC; fig|1497955.3.peg.253; -.
BioCyc; GCF_001552885-HMP:HMPREF1872_RS01315-MONOMER; -.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-UniRule.
GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
GO; GO:0070181; F:small ribosomal subunit rRNA binding; IEA:UniProtKB-UniRule.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-UniRule.
GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
CDD; cd04163; Era; 1.
Gene3D; 3.30.300.20; -; 1.
Gene3D; 3.40.390.30; -; 1.
HAMAP; MF_00009; Endoribonucl_YbeY; 1.
HAMAP; MF_00367; GTPase_Era; 1.
InterPro; IPR030388; G_ERA_dom.
InterPro; IPR005662; GTP-bd_Era.
InterPro; IPR006073; GTP_binding_domain.
InterPro; IPR015946; KH_dom-like_a/b.
InterPro; IPR004044; KH_dom_type_2.
InterPro; IPR009019; KH_sf_prok-type.
InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR005225; Small_GTP-bd_dom.
InterPro; IPR002036; YbeY.
Pfam; PF07650; KH_2; 1.
Pfam; PF01926; MMR_HSR1; 1.
Pfam; PF02130; UPF0054; 1.
PRINTS; PR00326; GTP1OBG.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF54814; SSF54814; 1.
TIGRFAMs; TIGR00436; era; 1.
TIGRFAMs; TIGR00231; small_GTP; 1.
TIGRFAMs; TIGR00043; TIGR00043; 1.
PROSITE; PS51713; G_ERA; 1.
PROSITE; PS50823; KH_TYPE_2; 1.
3: Inferred from homology;
Cell membrane {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085715};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00085733};
Endonuclease {ECO:0000256|HAMAP-Rule:MF_00009};
GTP-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|RuleBase:RU003761, ECO:0000256|SAAS:SAAS00494972};
Hydrolase {ECO:0000256|HAMAP-Rule:MF_00009};
Membrane {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085715};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00009};
Nuclease {ECO:0000256|HAMAP-Rule:MF_00009};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|RuleBase:RU003761, ECO:0000256|SAAS:SAAS00494972};
Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00085766};
RNA-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085741};
rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009};
rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085741};
Zinc {ECO:0000256|HAMAP-Rule:MF_00009}.
DOMAIN 255 423 Era-type G.
{ECO:0000259|PROSITE:PS51713}.
DOMAIN 454 536 KH type-2. {ECO:0000259|PROSITE:PS50823}.
NP_BIND 263 270 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
NP_BIND 310 314 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
NP_BIND 373 376 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
METAL 178 178 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
METAL 182 182 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
METAL 188 188 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
SEQUENCE 561 AA; 63580 MW; E9B65F242E702E98 CRC64;
MLVRVKLFHE FDSDAEFIDK FAVPEAYLAA FNGQVDLLLD AWQAALTRLL KTTLKLAASN
LLTSLENEVD VIELNVNLGA ASTIQALNKE FRHKDYVTDV LSFPQLDLHE GKATREWQES
DFAECFDDVP MALSDVADDE EVFCLNLGDI YLCGDKVAEQ AENYGHSYWR EFNFLCCHGF
LHVLGYDHEE GQREESLQFA LQDQILSALQ IERTLTEPKA SELVALAKEF SEQDCLTLQT
ESEAKIDETV PDNFKSGFVA IVGRPNVGKS TLLNQISGAY LAITSQKAQT TRDNIRTIYN
GNNSQIIFTD TPGAHKADDK LGTYMNQSGI AAIKDADLVL LVVDAHFKTA GLVEKKLIER
LEELKKPAIL VINKSDSIVK QELLPLMANY NELYPFIAII PISALDNEGI KDLLNEIEQN
LPNGPRYYPL DYFTDQTERN ICAELIREQV LKYYHQELPY GVATEIEKFA EEYDEDGQRV
LAKIQASIIT EREGHKKMLI GKGGLALKRL ASSARIKMED LLDCKVYLEI RVKVRENWRD
KEMFLNNFGY NLKQAQNRPL R


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Pathways :
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1488: CFTR activity in the plasma membrane
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair
WP1673: Naphthalene and anthracene degradation
WP1675: Nitrogen metabolism
WP1676: Non-homologous end-joining

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[pdxJ ybeY THC_1421] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY BMS3Bbin14_01692] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY MldDRAFT_2020] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ MldDRAFT_5361] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY UWK_02766] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY DaAHT2_0453] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ Thein_1494] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY TOPB45_1438] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
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[ybeY pdxJ SAMN02745124_04057] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
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[pdxJ ybeY C0613_15480] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ COA36_04160] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY ACD_75C00607G0002] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ B5M56_02415] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ CSB34_06875] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY CSB23_03180] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[pdxJ ybeY CSA20_04540] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ CSA26_03115] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
[ybeY pdxJ DBT_1499] Multifunctional fusion protein [Includes: Pyridoxine 5'-phosphate synthase (PNP synthase) (EC 2.6.99.2); Endoribonuclease YbeY (EC 3.1.-.-)]
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Bibliography :