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Nucleoid-associated protein VV1_3120

 NDPA_VIBVU              Reviewed;         333 AA.
Q8D867;
21-NOV-2003, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 1.
13-FEB-2019, entry version 86.
RecName: Full=Nucleoid-associated protein VV1_3120 {ECO:0000255|HAMAP-Rule:MF_00730};
OrderedLocusNames=VV1_3120;
Vibrio vulnificus (strain CMCP6).
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
NCBI_TaxID=216895;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=CMCP6;
Rhee J.H., Kim S.Y., Chung S.S., Kim J.J., Moon Y.H., Jeong H.,
Choy H.E.;
"Complete genome sequence of Vibrio vulnificus CMCP6.";
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Cytoplasm, nucleoid {ECO:0000255|HAMAP-
Rule:MF_00730}.
-!- SIMILARITY: Belongs to the YejK family. {ECO:0000255|HAMAP-
Rule:MF_00730}.
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EMBL; AE016795; AAO11441.1; -; Genomic_DNA.
RefSeq; WP_011080920.1; NC_004459.3.
SMR; Q8D867; -.
EnsemblBacteria; AAO11441; AAO11441; VV1_3120.
GeneID; 2623966; -.
KEGG; vvu:VV1_3120; -.
PATRIC; fig|196600.6.peg.1160; -.
eggNOG; ENOG4106V8H; Bacteria.
eggNOG; COG3081; LUCA.
HOGENOM; HOG000275814; -.
KO; K06899; -.
OMA; TFIKGRV; -.
BioCyc; VVUL216895:G1GJ4-3168-MONOMER; -.
Proteomes; UP000002275; Chromosome 1.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-UniRule.
GO; GO:0009295; C:nucleoid; IEA:UniProtKB-SubCell.
HAMAP; MF_00730; NdpA; 1.
InterPro; IPR007358; Nucleoid_associated_NdpA.
PANTHER; PTHR38772; PTHR38772; 1.
Pfam; PF04245; NA37; 1.
3: Inferred from homology;
Complete proteome; Cytoplasm.
CHAIN 1 333 Nucleoid-associated protein VV1_3120.
/FTId=PRO_0000210923.
SEQUENCE 333 AA; 37722 MW; DB541DBBE56E1753 CRC64;
MSLHLSNVIL HQLSKNDQDE LMVNYRSESL VNDSSTENLV AELHRVFHSK AGKGFGCFQS
DSEFQIWLNE LQRGELNFYD FSQKCAVRLK EELAKYPFAD EGILVFAEYQ SLATDYLFVG
ILPLNQSLKV TEGLDISATD YLDINKMDIA ARIDLSVYEA DKESNRYLSY IKGRVGRKVA
DFFLDFLQAE VGLDSKQQNQ VLMQALDDFC TDAKLEKQEV NEYKKQVYEY CNGQIKAGEE
VEIRELSGEL PPSPSGASFL EFTQEQGYGL EESFPADRGL VRKLTKYVGA GGGLNVSFDS
LLLGERIFYD PETDTLTIKG TPPNLRDQLT RNR


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WP1676: Non-homologous end-joining
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WP1689: Porphyrin and chlorophyll metabolism
WP1693: Purine metabolism
WP1650: Fluorobenzoate degradation
WP2292: Chemokine signaling pathway
WP1659: Glycine, serine and threonine metabolism
WP2371: Parkinsons Disease Pathway
WP1049: G Protein Signaling Pathways
WP1713: Two-component system
WP1438: Influenza A virus infection
WP1892: Protein folding
WP1665: Limonene and pinene degradation
WP525: Mitochondrial Unfolded-Protein Response
WP1675: Nitrogen metabolism
WP813: G Protein Signaling Pathways
WP1531: Vitamin D synthesis
WP2032: TSH signaling pathway
WP1616: ABC transporters
WP2199: Seed Development
WP1685: Peptidoglycan biosynthesis

Related Genes :
[glmU VV1_1023] Bifunctional protein GlmU [Includes: UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)]
[fadB VV1_0981] Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)]
[hmp VV1_1301] Flavohemoprotein (Flavohemoglobin) (Hemoglobin-like protein) (Nitric oxide dioxygenase) (NO oxygenase) (NOD) (EC 1.14.12.17)
[hldE rfaE VV1_0613] Bifunctional protein HldE [Includes: D-beta-D-heptose 7-phosphate kinase (EC 2.7.1.167) (D-beta-D-heptose 7-phosphotransferase) (D-glycero-beta-D-manno-heptose-7-phosphate kinase); D-beta-D-heptose 1-phosphate adenylyltransferase (EC 2.7.7.70) (D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase)]
[thiI VV1_0310] tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[cca VV1_0622] Multifunctional CCA protein [Includes: CCA-adding enzyme (EC 2.7.7.72) (CCA tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA nucleotidyltransferase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cyclic phosphodiesterase (EC 3.1.4.-); Phosphatase (EC 3.1.3.-)]
[fur VV1_0175] Ferric uptake regulation protein (Ferric uptake regulator)
[coaBC VV1_0828] Coenzyme A biosynthesis bifunctional protein CoaBC (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (PPCDC) (EC 4.1.1.36) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (CoaB) (PPC synthetase) (PPCS) (Phosphopantothenoylcysteine synthase)]
[murE VV1_0583] UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) (Meso-A2pm-adding enzyme) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (UDP-MurNAc-tripeptide synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase)
[nspC VV1_3048] Carboxynorspermidine/carboxyspermidine decarboxylase (CANS DC/CAS DC) (CANSDC/CASDC) (EC 4.1.1.96)
[prs VV1_0257] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[rlmN VV1_0429] Dual-specificity RNA methyltransferase RlmN (EC 2.1.1.192) (23S rRNA (adenine(2503)-C(2))-methyltransferase) (23S rRNA m2A2503 methyltransferase) (Ribosomal RNA large subunit methyltransferase N) (tRNA (adenine(37)-C(2))-methyltransferase) (tRNA m2A37 methyltransferase)
[pyrG VV1_1578] CTP synthase (EC 6.3.4.2) (Cytidine 5'-triphosphate synthase) (Cytidine triphosphate synthetase) (CTP synthetase) (CTPS) (UTP--ammonia ligase)
[eno VV1_1579] Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
[fadJ VV1_1976] Fatty acid oxidation complex subunit alpha [Includes: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)]
[ilvC VV1_1077] Ketol-acid reductoisomerase (NADP(+)) (KARI) (EC 1.1.1.86) (Acetohydroxy-acid isomeroreductase) (AHIR) (Alpha-keto-beta-hydroxylacyl reductoisomerase) (Ketol-acid reductoisomerase type 2) (Ketol-acid reductoisomerase type II)
[nqrF VV1_1826] Na(+)-translocating NADH-quinone reductase subunit F (Na(+)-NQR subunit F) (Na(+)-translocating NQR subunit F) (EC 7.2.1.1) (NQR complex subunit F) (NQR-1 subunit F)
[purT VV1_2378] Formate-dependent phosphoribosylglycinamide formyltransferase (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) (EC 2.1.2.-) (GAR transformylase 2) (GART 2) (Non-folate glycinamide ribonucleotide transformylase) (Phosphoribosylglycinamide formyltransferase 2)
[fabA VV1_2629] 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.59) (3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA) (Beta-hydroxydecanoyl thioester dehydrase) (Trans-2-decenoyl-[acyl-carrier-protein] isomerase) (EC 5.3.3.14)
[VV1_1520] dITP/XTP pyrophosphatase (EC 3.6.1.66) (Non-canonical purine NTP pyrophosphatase) (Non-standard purine NTP pyrophosphatase) (Nucleoside-triphosphate diphosphatase) (Nucleoside-triphosphate pyrophosphatase) (NTPase)
[ackA1 VV1_2221] Acetate kinase 1 (EC 2.7.2.1) (Acetokinase 1)
[mutM fpg VV1_0821] Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (EC 3.2.2.23) (DNA-(apurinic or apyrimidinic site) lyase MutM) (AP lyase MutM) (EC 4.2.99.18)
[cysJ VV1_1402] Sulfite reductase [NADPH] flavoprotein alpha-component (SiR-FP) (EC 1.8.1.2)
[dapB VV1_0567] 4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) (EC 1.17.1.8)
[cobB VV1_2599] NAD-dependent protein deacylase (EC 3.5.1.-) (Regulatory protein SIR2 homolog)
[ispH lytB VV1_0504] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) (EC 1.17.7.4)
[pfkA VV1_1257] ATP-dependent 6-phosphofructokinase (ATP-PFK) (Phosphofructokinase) (EC 2.7.1.11) (Phosphohexokinase)
[dusA VV1_1398] tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.-) (EC 1.3.1.91) (U20-specific dihydrouridine synthase) (U20-specific Dus) (tRNA-dihydrouridine synthase A)
[ftsH VV1_1690] ATP-dependent zinc metalloprotease FtsH (EC 3.4.24.-)
[gmhA VV1_1897] Phosphoheptose isomerase (EC 5.3.1.28) (Sedoheptulose 7-phosphate isomerase)

Bibliography :
[31303979] Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology.
[31266875] The Stringent Response Inhibits DNA Replication Initiation in E. coli by Modulating Supercoiling of .
[31266871] The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes.
[31261873] Role of Protein Self-Association on DNA Condensation and Nucleoid Stability in a Bacterial Cell Model.
[31254421] Keeping replication on par with division in Bacillus.
[31215866] Silencing cryptic specialized metabolism in by the nucleoid-associated protein Lsr2.
[31212266] Nanoscale reorganizations of histone-like nucleoid structuring proteins in Escherichia coli are caused by silver nanoparticles.
[31195723] Organization of DNA in Mammalian Mitochondria.
[31189732] Position effects on promoter activity in and their consequences for antibiotic-resistance determinants.
[31184713] Characterization of the pleiotropic LysR-type transcription regulator LeuO of Escherichia coli.