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Oxidized polyvinyl alcohol hydrolase (OPH) (Oxidized PVA hydrolase) (EC 3.7.1.7) (Beta-diketone hydrolase)

 OPH_SPHS1               Reviewed;         364 AA.
Q588Z2;
03-OCT-2012, integrated into UniProtKB/Swiss-Prot.
10-MAY-2005, sequence version 1.
08-MAY-2019, entry version 28.
RecName: Full=Oxidized polyvinyl alcohol hydrolase;
Short=OPH;
Short=Oxidized PVA hydrolase;
EC=3.7.1.7;
AltName: Full=Beta-diketone hydrolase;
Flags: Precursor;
Name=oph;
Sphingopyxis sp. (strain 113P3).
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
NCBI_TaxID=292913;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 35-49 AND
222-230, FUNCTION, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION,
BIOPHYSICOCHEMICAL PROPERTIES, AND SUBUNIT.
STRAIN=113P3;
PubMed=15817792; DOI=10.1099/mic.0.27655-0;
Klomklang W., Tani A., Kimbara K., Mamoto R., Ueda T., Shimao M.,
Kawai F.;
"Biochemical and molecular characterization of a periplasmic hydrolase
for oxidized polyvinyl alcohol from Sphingomonas sp. strain 113P3.";
Microbiology 151:1255-1262(2005).
-!- FUNCTION: Catalyzes the hydrolysis of 4,6-nonanedione, a beta-
diketone compound. Also mediates hydrolysis of oxidized polyvinyl
alcohol (PVA) in the second step in the degradation of polyvinyl
alcohol. Not active toward the monoketone structure.
{ECO:0000269|PubMed:15817792}.
-!- CATALYTIC ACTIVITY:
Reaction=H2O + nonane-4,6-dione = butanoate + H(+) + pentan-2-one;
Xref=Rhea:RHEA:11908, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
ChEBI:CHEBI:16111, ChEBI:CHEBI:16472, ChEBI:CHEBI:17968;
EC=3.7.1.7; Evidence={ECO:0000269|PubMed:15817792};
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=0.2 mM for polyvinyl alcohol {ECO:0000269|PubMed:15817792};
KM=0.3 mM for p-nitrophenyl acetate
{ECO:0000269|PubMed:15817792};
Vmax=0.1 umol/min/mg enzyme with polyvinyl alcohol as substrate
{ECO:0000269|PubMed:15817792};
Vmax=3.4 umol/min/mg enzyme with p-nitrophenyl acetate as
substrate {ECO:0000269|PubMed:15817792};
pH dependence:
Optimum pH is 8.0. {ECO:0000269|PubMed:15817792};
Temperature dependence:
Optimum temperature is 37 degrees Celsius.
{ECO:0000269|PubMed:15817792};
-!- SUBUNIT: Monomer. {ECO:0000269|PubMed:15817792}.
-!- SUBCELLULAR LOCATION: Periplasm {ECO:0000269|PubMed:15817792}.
-!- SIMILARITY: Belongs to the peptidase S9A family. {ECO:0000305}.
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EMBL; AB190288; BAD95542.3; -; Genomic_DNA.
PDB; 3WLA; X-ray; 1.90 A; A/B/C=35-364.
PDBsum; 3WLA; -.
SMR; Q588Z2; -.
ESTHER; sphs1-OPH; AlphaBeta_hydrolase.
BioCyc; MetaCyc:MONOMER-15499; -.
GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
GO; GO:0047699; F:beta-diketone hydrolase activity; IEA:UniProtKB-EC.
Gene3D; 3.40.50.1820; -; 1.
InterPro; IPR029058; AB_hydrolase.
SUPFAM; SSF53474; SSF53474; 1.
1: Evidence at protein level;
3D-structure; Direct protein sequencing; Hydrolase; Periplasm; Signal.
SIGNAL 1 34 {ECO:0000269|PubMed:15817792}.
CHAIN 35 364 Oxidized polyvinyl alcohol hydrolase.
/FTId=PRO_0000419458.
ACT_SITE 190 190 Charge relay system. {ECO:0000250}.
ACT_SITE 293 293 Charge relay system. {ECO:0000250}.
STRAND 48 56 {ECO:0000244|PDB:3WLA}.
STRAND 59 66 {ECO:0000244|PDB:3WLA}.
STRAND 72 81 {ECO:0000244|PDB:3WLA}.
STRAND 84 86 {ECO:0000244|PDB:3WLA}.
HELIX 88 93 {ECO:0000244|PDB:3WLA}.
HELIX 95 97 {ECO:0000244|PDB:3WLA}.
HELIX 100 106 {ECO:0000244|PDB:3WLA}.
STRAND 109 113 {ECO:0000244|PDB:3WLA}.
HELIX 116 118 {ECO:0000244|PDB:3WLA}.
HELIX 127 129 {ECO:0000244|PDB:3WLA}.
STRAND 130 132 {ECO:0000244|PDB:3WLA}.
STRAND 137 142 {ECO:0000244|PDB:3WLA}.
HELIX 150 156 {ECO:0000244|PDB:3WLA}.
HELIX 161 173 {ECO:0000244|PDB:3WLA}.
TURN 174 176 {ECO:0000244|PDB:3WLA}.
STRAND 179 189 {ECO:0000244|PDB:3WLA}.
HELIX 191 202 {ECO:0000244|PDB:3WLA}.
TURN 204 206 {ECO:0000244|PDB:3WLA}.
STRAND 208 214 {ECO:0000244|PDB:3WLA}.
HELIX 229 238 {ECO:0000244|PDB:3WLA}.
STRAND 259 266 {ECO:0000244|PDB:3WLA}.
STRAND 272 274 {ECO:0000244|PDB:3WLA}.
TURN 277 279 {ECO:0000244|PDB:3WLA}.
STRAND 281 284 {ECO:0000244|PDB:3WLA}.
HELIX 285 297 {ECO:0000244|PDB:3WLA}.
STRAND 302 308 {ECO:0000244|PDB:3WLA}.
STRAND 313 315 {ECO:0000244|PDB:3WLA}.
HELIX 320 332 {ECO:0000244|PDB:3WLA}.
HELIX 340 342 {ECO:0000244|PDB:3WLA}.
STRAND 353 358 {ECO:0000244|PDB:3WLA}.
STRAND 360 362 {ECO:0000244|PDB:3WLA}.
SEQUENCE 364 AA; 39401 MW; 401909509D3F82F8 CRC64;
MFKPVVKSRS SRSFCYLAGC LAMVAATLSS TAQAKSEWAC PEGFTPKAGL NTDFPSDGKK
RAFVVVPPKD SAGGAPVWVP MVGTVEATNW NLNVPRSGNN AKLAEHGYMV ISPVRQCAEQ
DPNLGAGACN GVGKDGWTWN PWNDGRAPDA SGDKYKTDAG DDVRFLEAMV RCVGTKWKLD
RKRLFLGGIS AGGTMTNRAL LFDSEFWAGG MPISGEWYST KDDGSTVPFQ ETRKMVAAAP
AKIWQGRVGP YPLPSKLDPM VVITVWGGEK DLWDCGPPLG LCSDYRPTTQ ASSNYFSSIS
NVVHVACSAT HGHMWPQVNT DAFNLWALNT MASHPKGSSP KDFKLTAPPE GYSCKIGRFT
DHYK


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WP2349: vitamin B3 (niacin), NAD and NADP biosynthesis pathway
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WP1000: Arachidonate Epoxygenase Epoxide Hydrolase
WP2344: vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) biosynthesis and salvage pathway
WP1250: Arachidonate Epoxygenase Epoxide Hydrolase
WP2341: vitamin B1 (thiamin) biosynthesis and salvage pathway
WP1285: Arachidonate Epoxygenase Epoxide Hydrolase
WP1116: Arachidonate Epoxygenase Epoxide Hydrolase
WP1237: Fatty Acid Beta Oxidation
WP542: Electron Transport Chain
WP1045: TGF-beta Receptor Signaling Pathway
WP1655: Geraniol degradation
WP372: Beta Oxidation Meta Pathway
WP988: Keap1-Nrf2
WP1058: Senescence and Autophagy
WP1835: Interferon alpha/beta signaling
WP406: Mitochondrial LC-Fatty Acid Beta-Oxidation
WP1269: Fatty Acid Beta Oxidation
WP580: Dauer formation
WP1367: TGF-beta Receptor Signaling Pathway
WP249: Beta Oxidation of Unsaturated Fatty Acids
WP1107: Mitochondrial LC-Fatty Acid Beta-Oxidation
WP1904: RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways

Related Genes :
[APEH D3F15S2 D3S48E DNF15S2] Acylamino-acid-releasing enzyme (AARE) (EC 3.4.19.1) (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase) (Oxidized protein hydrolase) (OPH)
[AARE At4g14570 dl3325w] Acylamino-acid-releasing enzyme (AARE) (EC 3.4.19.1) (Oxidized protein hydrolase) (OPH)
[ABHD12 C20orf22] Lysophosphatidylserine lipase ABHD12 (EC 3.1.-.-) (2-arachidonoylglycerol hydrolase ABHD12) (Abhydrolase domain-containing protein 12) (hABHD12) (Monoacylglycerol lipase ABHD12) (EC 3.1.1.23) (Oxidized phosphatidylserine lipase ABHD12) (EC 3.1.-.-)
[ABHD12 QtsA-16132] Lysophosphatidylserine lipase ABHD12 (EC 3.1.-.-) (2-arachidonoylglycerol hydrolase ABHD12) (Abhydrolase domain-containing protein 12) (Monoacylglycerol lipase ABHD12) (EC 3.1.1.23) (Oxidized phosphatidylserine lipase ABHD12) (EC 3.1.-.-)
[Rbck1 Pkcbpb15 Rbck Ubce7ip3] RanBP-type and C3HC4-type zinc finger-containing protein 1 (EC 2.3.2.31) (Heme-oxidized IRP2 ubiquitin ligase 1 homolog) (HOIL-1) (Protein kinase C-binding protein beta-15) (RBCC protein interacting with PKC) (RING-type E3 ubiquitin transferase HOIL-1) (Ubiquitin-conjugating enzyme 7-interacting protein 3)
[RBCK1 C20orf18 RNF54 UBCE7IP3 XAP3 XAP4] RanBP-type and C3HC4-type zinc finger-containing protein 1 (EC 2.3.2.31) (HBV-associated factor 4) (Heme-oxidized IRP2 ubiquitin ligase 1) (HOIL-1) (Hepatitis B virus X-associated protein 4) (RING finger protein 54) (RING-type E3 ubiquitin transferase HOIL-1) (Ubiquitin-conjugating enzyme 7-interacting protein 3)
[Rbck1 Rbck Ubce7ip3 Uip28] RanBP-type and C3HC4-type zinc finger-containing protein 1 (EC 2.3.2.31) (Heme-oxidized IRP2 ubiquitin ligase 1 homolog) (HOIL-1) (RING-type E3 ubiquitin transferase HOIL-1) (UbcM4-interacting protein 28) (Ubiquitin-conjugating enzyme 7-interacting protein 3)
[hchA A8C65_13880 A9R57_25255 AKG99_20940 AMK83_16550 B7C53_22525 B9M99_11580 B9T59_01945 BJJ90_15205 BMT49_12710 BMT53_00170 BUE81_10670 BW690_17225 BZL69_29425 C2U48_24800 C5715_19445 C5N07_21380 C6669_19295 C7B06_02290 C7B07_03930 CDL37_00765 CG691_19145 CG705_13560 CG706_14580 CIJ94_05515 COD46_23180 CQP61_17160 CRD98_26150 CY655_12940 D5618_21870 D8K42_21280 D8Y29_11125 D9D20_21030 D9D43_06110 D9E22_21005 D9H68_20750 D9H70_25730 D9I87_15275 DL800_09215 DNQ41_14245 DQE83_22775 DTL43_21780 DTM25_06080 DU321_04440 E2855_02503 E2863_02392 EC95NR1_00961 ED648_25045 EFV01_02465 EFV04_09725 EOL36_23890 ERS085379_01273 ERS085386_05041 HMPREF3040_01583 HW43_13705 NCTC10082_04431 NCTC10418_03071 NCTC10767_03558 NCTC11022_01867 NCTC11126_04427 NCTC11181_05650 NCTC12950_02263 NCTC13462_05714 NCTC8985_00529 NCTC9111_05933 NCTC9112_02079 NCTC9703_00277 PU06_24500 SAMEA3472043_00447 SAMEA3472055_03589 SAMEA3472056_01268 SAMEA3472070_00654 SAMEA3472080_04213 SAMEA3472090_03376 SAMEA3472110_00060 SAMEA3472112_00448 SAMEA3752372_00752 UN91_23615 WQ89_10695] Protein/nucleic acid deglycase HchA (EC 3.1.2.-) (EC 3.5.1.-) (EC 3.5.1.124) (Maillard deglycase)
[TINAGL1 GIS5 LCN7 OLRG2 TINAGL PP6614 PSEC0088 UNQ204/PRO230] Tubulointerstitial nephritis antigen-like (Glucocorticoid-inducible protein 5) (Oxidized LDL-responsive gene 2 protein) (OLRG-2) (Tubulointerstitial nephritis antigen-related protein) (TIN Ag-related protein) (TIN-Ag-RP)
[NUDT1 NUDX1 At1g68760 F14K14.13] Nudix hydrolase 1 (AtNUDT1) (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTP diphosphatase) (8-oxo-dGTPase) (EC 3.6.1.55) (Dihydroneopterin triphosphate diphosphatase) (EC 3.6.1.67) (Dihydroneopterin triphosphate pyrophosphohydrolase) (DHNTP pyrophosphohydrolase) (NADH pyrophosphatase) (EC 3.6.1.22)
[cdiA4 cdiA-CTo11 ECH7EC869_5883] Deoxyribonuclease CdiA-o11 (DNase CdiA) (EC 3.1.-.-) (CdiA-o11-EC869) (Toxin CdiA)
[NUDT15 MTH2] Nucleotide triphosphate diphosphatase NUDT15 (EC 3.6.1.9) (MutT homolog 2) (MTH2) (Nucleoside diphosphate-linked moiety X motif 15) (Nudix motif 15) (Nucleoside diphosphate-linked to another moiety X hydrolase 15) (Nudix hydrolase 15)
[NUDT16] U8 snoRNA-decapping enzyme (EC 3.6.1.62) (IDP phosphatase) (IDPase) (EC 3.6.1.64) (Inosine diphosphate phosphatase) (Nucleoside diphosphate-linked moiety X motif 16) (Nudix motif 16) (Nudix hydrolase 16) (U8 snoRNA-binding protein H29K) (m7GpppN-mRNA hydrolase)
[NUDT7 GFG1 NUDX7 At4g12720 T20K18.70] Nudix hydrolase 7 (AtNUDT7) (EC 3.6.1.-) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (Protein GROWTH FACTOR GENE 1)
[PF3D7_0623200] Ferredoxin--NADP reductase, apicoplast (EC 1.18.1.2)
[hchA ECH7EC869_3386] Protein/nucleic acid deglycase HchA (EC 3.1.2.-) (EC 3.5.1.-) (EC 3.5.1.124) (Maillard deglycase)
[] Genome polyprotein [Cleaved into: P1 proteinase (EC 3.4.-.-) (N-terminal protein); Helper component proteinase (HC-pro) (EC 3.4.22.45); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI) (EC 3.6.4.-); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (NI-a) (NIa) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro) (NIa-pro); Nuclear inclusion protein B (NI-b) (NIb) (EC 2.7.7.48) (RNA-directed RNA polymerase); Capsid protein (CP) (Coat protein)]
[Nudt11 Dipp3b MNCb-1696] Diphosphoinositol polyphosphate phosphohydrolase 3-beta (DIPP-3-beta) (DIPP3-beta) (EC 3.6.1.52) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 3-beta) (Diadenosine hexaphosphate hydrolase (AMP-forming)) (EC 3.6.1.60) (Nucleoside diphosphate-linked moiety X motif 11) (Nudix motif 11)
[NUDT11 APS1 DIPP3B] Diphosphoinositol polyphosphate phosphohydrolase 3-beta (DIPP-3-beta) (DIPP3-beta) (hDIPP3beta) (EC 3.6.1.52) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 3-beta) (Diadenosine hexaphosphate hydrolase (AMP-forming)) (EC 3.6.1.60) (Nucleoside diphosphate-linked moiety X motif 11) (Nudix motif 11) (hAps1)
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]
[Nudt15 Mth2] Nucleotide triphosphate diphosphatase NUDT15 (EC 3.6.1.9) (MutT homolog 2) (mMTH2) (Nucleoside diphosphate-linked moiety X motif 15) (Nudix motif 15) (Nucleoside diphosphate-linked to another moiety X hydrolase 15) (Nudix hydrolase 15)
[MEP1B] Meprin A subunit beta (EC 3.4.24.63) (Endopeptidase-2) (Meprin B) (N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase subunit beta) (PABA peptide hydrolase) (PPH beta)
[spoT b3650 JW3625] Bifunctional (p)ppGpp synthase/hydrolase SpoT [Includes: GTP pyrophosphokinase (EC 2.7.6.5) ((p)ppGpp synthase) (ATP:GTP 3'-pyrophosphotransferase) (Stringent response-like protein) (ppGpp synthase II); Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) (Penta-phosphate guanosine-3'-pyrophosphohydrolase) ((ppGpp)ase)]
[relA Rv2583c MTCY227.18] Bifunctional (p)ppGpp synthase/hydrolase RelA [Includes: GTP pyrophosphokinase (EC 2.7.6.5) ((p)ppGpp synthase) (ATP:GTP 3'-pyrophosphotransferase) (Stringent response-like protein) (ppGpp synthase II); Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) (Penta-phosphate guanosine-3'-pyrophosphohydrolase) ((ppGpp)ase)]
[nudt16] U8 snoRNA-decapping enzyme (EC 3.6.1.62) (IDP phosphatase) (IDPase) (EC 3.6.1.64) (Inosine diphosphate phosphatase) (Nucleoside diphosphate-linked moiety X motif 16) (Nudix motif 16) (U8 snoRNA-binding protein X29) (m7GpppN-mRNA hydrolase)
[dtd PF11_0095 PF3D7_1108200] D-aminoacyl-tRNA deacylase (DTD) (EC 3.1.1.96) (D-Tyrosyl-tRNA(Tyr) deacylase) (Gly-tRNA(Ala) deacylase) (EC 3.1.1.-) (Gly-tRNA(Gly) deacylase)
[CES1 CES2 SES1] Liver carboxylesterase 1 (Acyl-coenzyme A:cholesterol acyltransferase) (ACAT) (Brain carboxylesterase hBr1) (Carboxylesterase 1) (CE-1) (hCE-1) (EC 3.1.1.1) (Cocaine carboxylesterase) (Egasyn) (HMSE) (Methylumbelliferyl-acetate deacetylase 1) (EC 3.1.1.56) (Monocyte/macrophage serine esterase) (Retinyl ester hydrolase) (REH) (Serine esterase 1) (Triacylglycerol hydrolase) (TGH)
[DCS1 YLR270W] m7GpppX diphosphatase (EC 3.6.1.59) (DCS-1) (Hint-related 7meGMP-directed hydrolase 1) (Protein Dcs1p) (Scavenger mRNA-decapping enzyme DcpS)
[DCPS DCS1 HINT5 HSPC015] m7GpppX diphosphatase (EC 3.6.1.59) (DCS-1) (Decapping scavenger enzyme) (Hint-related 7meGMP-directed hydrolase) (Histidine triad nucleotide-binding protein 5) (Histidine triad protein member 5) (HINT-5) (Scavenger mRNA-decapping enzyme DcpS)
[BAM1 BMY7 TRBAMY At3g23920 F14O13.12] Beta-amylase 1, chloroplastic (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (Beta-amylase 7) (Thioredoxin-regulated beta-amylase) (TR-BAMY)

Bibliography :