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PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)

 PAN3_EMENI              Reviewed;         661 AA.
Q5BFB1; C8VQW3; C8VQW4;
24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
16-NOV-2011, sequence version 3.
16-JAN-2019, entry version 94.
RecName: Full=PAN2-PAN3 deadenylation complex subunit pan3 {ECO:0000255|HAMAP-Rule:MF_03181};
AltName: Full=PAB1P-dependent poly(A)-specific ribonuclease {ECO:0000255|HAMAP-Rule:MF_03181};
AltName: Full=Poly(A)-nuclease deadenylation complex subunit 3 {ECO:0000255|HAMAP-Rule:MF_03181};
Short=PAN deadenylation complex subunit 3 {ECO:0000255|HAMAP-Rule:MF_03181};
Name=pan3 {ECO:0000255|HAMAP-Rule:MF_03181};
ORFNames=AN0769, AN10121/AN10119;
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) (Aspergillus nidulans).
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus.
NCBI_TaxID=227321;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139;
PubMed=16372000; DOI=10.1038/nature04341;
Galagan J.E., Calvo S.E., Cuomo C., Ma L.-J., Wortman J.R.,
Batzoglou S., Lee S.-I., Bastuerkmen M., Spevak C.C., Clutterbuck J.,
Kapitonov V., Jurka J., Scazzocchio C., Farman M.L., Butler J.,
Purcell S., Harris S., Braus G.H., Draht O., Busch S., D'Enfert C.,
Bouchier C., Goldman G.H., Bell-Pedersen D., Griffiths-Jones S.,
Doonan J.H., Yu J., Vienken K., Pain A., Freitag M., Selker E.U.,
Archer D.B., Penalva M.A., Oakley B.R., Momany M., Tanaka T.,
Kumagai T., Asai K., Machida M., Nierman W.C., Denning D.W.,
Caddick M.X., Hynes M., Paoletti M., Fischer R., Miller B.L.,
Dyer P.S., Sachs M.S., Osmani S.A., Birren B.W.;
"Sequencing of Aspergillus nidulans and comparative analysis with A.
fumigatus and A. oryzae.";
Nature 438:1105-1115(2005).
[2]
GENOME REANNOTATION.
STRAIN=FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139;
PubMed=19146970; DOI=10.1016/j.fgb.2008.12.003;
Wortman J.R., Gilsenan J.M., Joardar V., Deegan J., Clutterbuck J.,
Andersen M.R., Archer D., Bencina M., Braus G., Coutinho P.,
von Dohren H., Doonan J., Driessen A.J., Durek P., Espeso E.,
Fekete E., Flipphi M., Estrada C.G., Geysens S., Goldman G.,
de Groot P.W., Hansen K., Harris S.D., Heinekamp T., Helmstaedt K.,
Henrissat B., Hofmann G., Homan T., Horio T., Horiuchi H., James S.,
Jones M., Karaffa L., Karanyi Z., Kato M., Keller N., Kelly D.E.,
Kiel J.A., Kim J.M., van der Klei I.J., Klis F.M., Kovalchuk A.,
Krasevec N., Kubicek C.P., Liu B., Maccabe A., Meyer V., Mirabito P.,
Miskei M., Mos M., Mullins J., Nelson D.R., Nielsen J., Oakley B.R.,
Osmani S.A., Pakula T., Paszewski A., Paulsen I., Pilsyk S., Pocsi I.,
Punt P.J., Ram A.F., Ren Q., Robellet X., Robson G., Seiboth B.,
van Solingen P., Specht T., Sun J., Taheri-Talesh N., Takeshita N.,
Ussery D., vanKuyk P.A., Visser H., van de Vondervoort P.J.,
de Vries R.P., Walton J., Xiang X., Xiong Y., Zeng A.P., Brandt B.W.,
Cornell M.J., van den Hondel C.A., Visser J., Oliver S.G., Turner G.;
"The 2008 update of the Aspergillus nidulans genome annotation: a
community effort.";
Fungal Genet. Biol. 46:S2-13(2009).
-!- FUNCTION: Regulatory subunit of the poly(A)-nuclease (PAN)
deadenylation complex, one of two cytoplasmic mRNA deadenylases
involved in mRNA turnover. PAN specifically shortens poly(A) tails
of RNA and the activity is stimulated by poly(A)-binding protein
pab1. PAN deadenylation is followed by rapid degradation of the
shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs
are then degraded by two alternative mechanisms, namely exosome-
mediated 3'-5' exonucleolytic degradation, or deadenlyation-
dependent mRNA decaping and subsequent 5'-3' exonucleolytic
degradation by XRN1. May also be involved in post-transcriptional
maturation of mRNA poly(A) tails. pan3 acts as a positive
regulator for PAN activity, recruiting the catalytic subunit pan2
to mRNA via its interaction with RNA and with pab1.
{ECO:0000255|HAMAP-Rule:MF_03181}.
-!- SUBUNIT: Homodimer. Forms a heterotrimer with a catalytic subunit
pan2 to form the poly(a)-nuclease (PAN) deadenylation complex.
Interacts (via PAM-2 motif) with poly(A)-binding protein pab1 (via
PABC domain), conferring substrate specificity of the enzyme
complex. {ECO:0000255|HAMAP-Rule:MF_03181}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_03181}.
-!- DOMAIN: The N-terminal zinc finger binds to poly(A) RNA.
{ECO:0000255|HAMAP-Rule:MF_03181}.
-!- DOMAIN: Contains a pseudokinase domain. The protein kinase domain
is predicted to be catalytically inactive because some of the
residues important for catalytic activity are substituted and it
lacks the equivalent of the binding site for a peptide substrate.
However, it has retained an ATP-binding site and ATP-binding is
required for mRNA degradation, stimulating the activity of the
pan2 nuclease in vitro. The nucleotide-binding site is juxtaposed
to the RNase active site of pan2 in the complex and may actually
bind nucleosides of a poly(A) RNA rather than ATP, feeding the
poly(A)-tail to the active site of the deadenylase and thus
increasing the efficiency with which this distributive enzyme
degrades oligo(A) RNAs. {ECO:0000255|HAMAP-Rule:MF_03181}.
-!- DOMAIN: The pseudokinase domain, the coiled-coil (CC), and C-
terminal knob domain (CK) form a structural unit (PKC) that forms
an extensive high-affinity interaction surface for pan2.
{ECO:0000255|HAMAP-Rule:MF_03181}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. PAN3
family. {ECO:0000255|HAMAP-Rule:MF_03181}.
-!- SEQUENCE CAUTION:
Sequence=CBF88820.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CBF88822.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=EAA65411.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AACD01000012; EAA65411.1; ALT_SEQ; Genomic_DNA.
EMBL; BN001308; CBF88822.1; ALT_SEQ; Genomic_DNA.
EMBL; BN001308; CBF88820.1; ALT_SEQ; Genomic_DNA.
RefSeq; XP_658373.1; XM_653281.1.
SMR; Q5BFB1; -.
STRING; 162425.CADANIAP00001896; -.
EnsemblFungi; EAA65411; EAA65411; AN0769.2.
GeneID; 2876545; -.
KEGG; ani:AN0769.2; -.
HOGENOM; HOG000007619; -.
InParanoid; Q5BFB1; -.
KO; K12572; -.
OrthoDB; 1515085at2759; -.
Proteomes; UP000000560; Chromosome VIII.
Proteomes; UP000005890; Unassembled WGS sequence.
GO; GO:0000932; C:P-body; IBA:GO_Central.
GO; GO:0031251; C:PAN complex; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004672; F:protein kinase activity; IEA:InterPro.
GO; GO:0003723; F:RNA binding; IEA:InterPro.
GO; GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IBA:GO_Central.
GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
GO; GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IBA:GO_Central.
GO; GO:0010606; P:positive regulation of cytoplasmic mRNA processing body assembly; IBA:GO_Central.
GO; GO:0090503; P:RNA phosphodiester bond hydrolysis, exonucleolytic; IEA:GOC.
HAMAP; MF_03181; PAN3; 1.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR030844; PAN3.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR000571; Znf_CCCH.
PANTHER; PTHR12272; PTHR12272; 1.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS50103; ZF_C3H1; 1.
3: Inferred from homology;
ATP-binding; Coiled coil; Complete proteome; Cytoplasm; Metal-binding;
mRNA processing; Nucleotide-binding; Reference proteome; Zinc;
Zinc-finger.
CHAIN 1 661 PAN2-PAN3 deadenylation complex subunit
pan3.
/FTId=PRO_0000295368.
ZN_FING 26 55 C3H1-type. {ECO:0000255|HAMAP-
Rule:MF_03181}.
NP_BIND 364 371 ATP. {ECO:0000255|HAMAP-Rule:MF_03181}.
NP_BIND 424 425 ATP. {ECO:0000255|HAMAP-Rule:MF_03181}.
REGION 263 524 Pseudokinase domain. {ECO:0000255|HAMAP-
Rule:MF_03181}.
REGION 564 661 Knob domain. {ECO:0000255|HAMAP-
Rule:MF_03181}.
COILED 525 563 {ECO:0000255|HAMAP-Rule:MF_03181}.
MOTIF 63 83 PABPC-interacting motif-2 (PAM-2).
{ECO:0000305}.
BINDING 315 315 ATP. {ECO:0000255|HAMAP-Rule:MF_03181}.
SEQUENCE 661 AA; 73162 MW; 117DB622830E046E CRC64;
MASVGKPSLE DARRGTGSPK MKARENAKDT LCRNVTIYGR CRYEDKGCAF NHDPHKNSNQ
SDNASKKRFN VDSPSFTPSL LPSNGSSPTS SSSSLKKSST ISPKAANAAP FQPRTAASRS
NTSTPGVRQD AVAPDWSVAE AQEFIPQGFD PTHMSPLHGN GNPGVASANA FDPFVSTPNP
LAAPGAVGPV QANPFSHDAA AATLGGAYYA NQAGFQQPVQ YHLYAPIGPH NQNALAYQRN
VHDLFLPNDF REELQKKAAA TLQTLPNTQL PAQVDYFHSL VPLDLNHQKN AAIFGYPSWV
YKAQSTKDGS YYALRRLEGF RLTNEKAIRS VQAWKRIASG SMVTIHDAFT SRSFQDSSLI
FVTDYHPLSK TLAEQHLSAG GPRFQARHNA HVPEQILWGY ITQIANALKC IHSAGLAARI
IDPSKILLTG RNRIRLNACA IMDVVQYDAQ RSVADLQRQD LVNFGQLILT LGANQPNVIH
NPSKAMEHFT RAYSPQLKNT VMWLLGGMQK DQERNIDILI NGISSQLMST FDSALHLDDQ
LTSDLGRELE NGRLVRLLTK LNFINERPEH EHDRQWSENG ERFYLKIFRD YVFHQVDASG
DPVVDLGHVL TCLNKLDAGT DERITLVSRD EQTCFVVSYK ELKKGLESSF QALLRPSRRP
H


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WP1672: Mismatch repair
WP1102: EBV LMP1 signaling
WP1122: Blood Clotting Cascade
WP1209: EBV LMP1 signaling
WP1224: EBV LMP1 signaling
WP1243: EBV LMP1 signaling
WP1278: EBV LMP1 signaling
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WP1571: EBV LMP1 signaling
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WP1626: Benzoate degradation via CoA ligation
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WP1718: Vitamin B6 metabolism
WP2083: Nicotine Activity on Dopaminergic Neurons

Related Genes :
[PAN3 ECM35 YKL025C] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN2 YGL094C] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[PAN3] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[Pan3] PAN2-PAN3 deadenylation complex subunit Pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN2 KIAA0710 USP52] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (Inactive ubiquitin carboxyl-terminal hydrolase 52) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[PAN3 CG11486] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[Pan2 Kiaa0710 Usp52] PAN2-PAN3 deadenylation complex catalytic subunit Pan2 (EC 3.1.13.4) (Inactive ubiquitin carboxyl-terminal hydrolase 52) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[PAN3 CTHT_0011660] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[par-2 pan3 NCU01929] PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[par-1 pan2 NCU04792 NCU10733] PAN2-PAN3 deadenylation complex catalytic subunit pan2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[ppk26 pan3 SPBC336.14c] PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN2 CTHT_0042640] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[PAN2 CG8232] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[Pan2 Usp52] PAN2-PAN3 deadenylation complex catalytic subunit Pan2 (EC 3.1.13.4) (Inactive ubiquitin carboxyl-terminal hydrolase 52) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[pan2 ubp13 SPAC22G7.04] PAN2-PAN3 deadenylation complex catalytic subunit pan2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[panl-3 PAN3 ZK632.7] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN2 USP52 RCJMB04_3e13] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (Inactive ubiquitin carboxyl-terminal hydrolase 52) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[pan3 DDB_G0279129] PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[pan3 AN0769 AN10121/AN10119] PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[pan3 AfA10A1.020c AFUA_1G14310] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[pan3 TEgg127h19.1] PAN2-PAN3 deadenylation complex subunit pan3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3 CAALFM_C505170WA CaO19.11493 CaO19.4010] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3 ACR172W] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3 CNJ02470] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3 SNOG_02480] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3 CK820_G0032573] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[Pan3 PAN3] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN3] PAN2-PAN3 deadenylation complex subunit PAN3 (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 3) (PAN deadenylation complex subunit 3)
[PAN2 CND04900] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)
[PAN2 A1Z7K9 Dmel\CG8232 Pan2 pan2 CG8232 Dmel_CG8232] PAN2-PAN3 deadenylation complex catalytic subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent poly(A)-specific ribonuclease) (Poly(A)-nuclease deadenylation complex subunit 2) (PAN deadenylation complex subunit 2)

Bibliography :
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