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Pair-rule protein odd-paired

 OPA_DROME               Reviewed;         609 AA.
P39768; A0JQ21; Q960Y0; Q9VN66;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
29-MAY-2007, sequence version 2.
13-FEB-2019, entry version 165.
RecName: Full=Pair-rule protein odd-paired;
Name=opa; ORFNames=CG1133;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
TISSUE=Embryo;
PubMed=8288124; DOI=10.1101/gad.8.1.105;
Benedyk M.J., Mullen J.R., Dinardo S.;
"Odd-paired: a zinc finger pair-rule protein required for the timely
activation of engrailed and wingless in Drosophila embryos.";
Genes Dev. 8:105-117(1994).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
PubMed=7781900; DOI=10.1006/dbio.1995.1171;
Cimbora D.M., Sakonju S.;
"Drosophila midgut morphogenesis requires the function of the
segmentation gene odd-paired.";
Dev. Biol. 169:580-595(1995).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley; TISSUE=Embryo;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley;
Stapleton M., Carlson J.W., Frise E., Kapadia B., Park S., Wan K.H.,
Yu C., Celniker S.E.;
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Transcription factor essential for parasegmental
subdivision of the embryo. It is involved in the activation of
wingless (wg) in odd parasegments. It is also required for the
timely activation of wg in the remaining parasegments and for the
timely activation of engrailed (en) in all parasegments.
{ECO:0000269|PubMed:7781900, ECO:0000269|PubMed:8288124}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed throughout all segment primordia;
expressed ubiquitously in the ectoderm and mesoderm precursors.
{ECO:0000269|PubMed:7781900, ECO:0000269|PubMed:8288124}.
-!- DEVELOPMENTAL STAGE: The peak expression is seen between 2 and 12
hours of embryogenesis. Expression continues through the larval
instars and during pupation although at lower levels compared with
embryogenesis. {ECO:0000269|PubMed:7781900,
ECO:0000269|PubMed:8288124}.
-!- SIMILARITY: Belongs to the GLI C2H2-type zinc-finger protein
family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; U04435; AAA18958.1; -; mRNA.
EMBL; S78339; AAB34592.1; -; mRNA.
EMBL; AE014297; AAF52084.1; -; Genomic_DNA.
EMBL; AY051783; AAK93207.1; -; mRNA.
EMBL; BT029391; ABK56895.1; -; mRNA.
PIR; A49839; A49839.
RefSeq; NP_524228.2; NM_079504.4.
UniGene; Dm.1066; -.
ProteinModelPortal; P39768; -.
SMR; P39768; -.
BioGrid; 65820; 32.
DIP; DIP-17067N; -.
IntAct; P39768; 6.
STRING; 7227.FBpp0078477; -.
PaxDb; P39768; -.
PRIDE; P39768; -.
EnsemblMetazoa; FBtr0078836; FBpp0078477; FBgn0003002.
GeneID; 40605; -.
KEGG; dme:Dmel_CG1133; -.
CTD; 40605; -.
FlyBase; FBgn0003002; opa.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
GeneTree; ENSGT00940000165216; -.
InParanoid; P39768; -.
KO; K09227; -.
OMA; IFHSMHE; -.
OrthoDB; 592023at2759; -.
SignaLink; P39768; -.
GenomeRNAi; 40605; -.
PRO; PR:P39768; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0003002; Expressed in 27 organ(s), highest expression level in embryo.
Genevisible; P39768; DM.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IMP:FlyBase.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:FlyBase.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IDA:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0007417; P:central nervous system development; IBA:GO_Central.
GO; GO:0008101; P:decapentaplegic signaling pathway; IMP:FlyBase.
GO; GO:0007455; P:eye-antennal disc morphogenesis; IMP:FlyBase.
GO; GO:0008354; P:germ cell migration; IMP:FlyBase.
GO; GO:0007494; P:midgut development; IMP:FlyBase.
GO; GO:0007366; P:periodic partitioning by pair rule gene; IEA:UniProtKB-KW.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IMP:FlyBase.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
Pfam; PF00096; zf-C2H2; 2.
SMART; SM00355; ZnF_C2H2; 5.
SUPFAM; SSF57667; SSF57667; 2.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 3.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 4.
2: Evidence at transcript level;
Activator; Complete proteome; Developmental protein; DNA-binding;
Metal-binding; Nucleus; Pair-rule protein; Reference proteome; Repeat;
Transcription; Transcription regulation; Zinc; Zinc-finger.
CHAIN 1 609 Pair-rule protein odd-paired.
/FTId=PRO_0000047015.
ZN_FING 210 249 C2H2-type 1; atypical.
{ECO:0000255|PROSITE-ProRule:PRU00042}.
ZN_FING 258 285 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 291 315 C2H2-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 321 345 C2H2-type 4. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 351 375 C2H2-type 5. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
COMPBIAS 33 61 Gln-rich.
COMPBIAS 94 122 Ala-rich.
COMPBIAS 136 140 Poly-His.
COMPBIAS 394 398 Poly-Ser.
COMPBIAS 414 434 Ser-rich.
COMPBIAS 453 466 Ser-rich.
COMPBIAS 470 494 Gln-rich.
COMPBIAS 529 567 Ala/His-rich.
COMPBIAS 593 599 Poly-His.
CONFLICT 587 587 P -> S (in Ref. 5; AAK93207).
{ECO:0000305}.
CONFLICT 606 606 A -> R (in Ref. 1; AAA18958 and 2;
AAB34592). {ECO:0000305}.
SEQUENCE 609 AA; 66238 MW; 434CF5B7212FD6CD CRC64;
MMMNAFIEPA QHHLASYGLR MSPNTTASNS NAQQQQQQQL EMTQQQQQQQ QQQQQQQQQD
QESAAATAAA YQNSGYGHFN SYASRDFLLG RREAEYGVAG SAGQASAAAD SMLFSGFPAQ
AAELGSGFGQ HPFHSHHHHH QMRMGMADAY AAGHPYNHHG NFPTAAVHHP VVHHPSHHAM
SAMHPAGAGA FLRYMRHQPA SSASSVKQEM QCLWIDPDQP GLVPPGGRKT CNKVFHSMHE
IVTHLTVEHV GGPECTTHAC FWVGCSRNGR PFKAKYKLVN HIRVHTGEKP FACPHPGCGK
VFARSENLKI HKRTHTGEKP FKCEHEGCDR RFANSSDRKK HSHVHTSDKP YNCRINGCDK
SYTHPSSLRK HMKVHGNVDE KSPSHGYDSE GEESSSSSII TGGAQTPPST RLDGSAGSSS
GVSSLSGGSG IKSSPHSIKS EPNPMHSVHL GASSSGSSST ASSSASHLLQ HQQHQHQQQQ
QQQQHQQQAQ QQQQLTAHPS DPKSSPALQL MAASASAYLP PPLGPPPSHH HHPHHHQAAP
SPGAAAASAS MLHHNHHLLY HPAAQHHPPS DWYHTTAPSG SAEAMNPLNH FGHHHHHHHL
MHPGAATAY


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Pathways :
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
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Related Genes :
[opa CG1133] Pair-rule protein odd-paired
[odd CG3851] Protein odd-skipped
[Ten-m odz CG5723] Teneurin-m (Tenm) (Odd Oz protein) (Tenascin-like protein)
[bowl CG10021] Protein bowel (Brother of odd with entrails limited)
[Tenm2 Kiaa1127 Odz2 Tnm2] Teneurin-2 (Ten-2) (Protein Odd Oz/ten-m homolog 2) (Tenascin-M2) (Ten-m2) (Teneurin transmembrane protein 2) [Cleaved into: Ten-2, soluble form; Ten-2 intracellular domain (Ten-2 ICD)]
[TENM1 ODZ1 TNM1] Teneurin-1 (Ten-1) (Protein Odd Oz/ten-m homolog 1) (Tenascin-M1) (Ten-m1) (Teneurin transmembrane protein 1) [Cleaved into: Ten-1 intracellular domain (IDten-1) (Ten-1 ICD); Teneurin C-terminal-associated peptide (TCPA-1) (Ten-1 extracellular domain) (Ten-1 ECD)]
[TENM1 ODZ1 TNM1] Teneurin-1 (Ten-1) (Protein Odd Oz/ten-m homolog 1) (Tenascin-M1) (Ten-m1) (Teneurin transmembrane protein 1) [Cleaved into: Ten-1 intracellular domain (IDten-1) (Ten-1 ICD); Teneurin C-terminal-associated peptide (TCPA-1) (Ten-1 extracellular domain) (Ten-1 ECD)]
[TENM2 ODZ2 TNM2] Teneurin-2 (Ten-2) (Neurestin) (Protein Odd Oz/ten-m homolog 2) (Tenascin-M2) (Ten-m2) (Teneurin transmembrane protein 2) [Cleaved into: Ten-2, soluble form; Ten-2 intracellular domain (Ten-2 ICD)]
[Tenm3 Kiaa1455 Odz3 Tnm3] Teneurin-3 (Ten-3) (Protein Odd Oz/ten-m homolog 3) (Tenascin-M3) (Ten-m3) (Teneurin transmembrane protein 3)
[zic1 opl] Zinc finger protein ZIC 1 (XZic1) (XlZic1) (ODD-paired-like) (Xopl) (ZIC-related protein 1) (ZIC-r1) (Zinc finger protein of the cerebellum 1)
[slp1 FD6 CG16738] Fork head domain transcription factor slp1 (Sloppy paired locus protein 1)
[TENM3 KIAA1455 ODZ3 TNM3] Teneurin-3 (Ten-3) (Protein Odd Oz/ten-m homolog 3) (Tenascin-M3) (Ten-m3) (Teneurin transmembrane protein 3)
[Osr1 Odd1] Protein odd-skipped-related 1
[Zic5 Opr] Zinc finger protein ZIC 5 (Odd paired-related protein) (Opa-related protein) (Zinc finger protein of the cerebellum 5)
[OSR1 ODD] Protein odd-skipped-related 1
[Osr1 Odd1] Protein odd-skipped-related 1
[OSR1 ODD1] Protein odd-skipped-related 1
[Tenm2 Odz2 Tnm2] Teneurin-2 (Ten-2) (Neurestin) (Protein Odd Oz/ten-m homolog 2) (Tenascin-M2) (Ten-m2) (Teneurin transmembrane protein 2) [Cleaved into: Ten-2, soluble form; Ten-2 intracellular domain (Ten-2 ICD)]
[TENM2 KIAA1127 ODZ2 TNM2] Teneurin-2 (Ten-2) (Protein Odd Oz/ten-m homolog 2) (Tenascin-M2) (Ten-m2) (Teneurin transmembrane protein 2) [Cleaved into: Ten-2, soluble form; Ten-2 intracellular domain (Ten-2 ICD)]
[prd CG6716] Segmentation protein paired
[PHOX2B PMX2B] Paired mesoderm homeobox protein 2B (Neuroblastoma Phox) (NBPhox) (PHOX2B homeodomain protein) (Paired-like homeobox 2B)
[PAX3 HUP2] Paired box protein Pax-3 (HuP2)
[Dmbx1 Cdmx Mbx Otx3 PaxB] Diencephalon/mesencephalon homeobox protein 1 (Diencephalon/mesencephalon-expressed brain homeobox gene 1 protein) (Orthodenticle homolog 3) (Paired-like homeobox protein DMBX1) (Paired-type homeobox Atx)
[Pitx2 Arp1 Brx1 Otlx2 Ptx2 Rgs] Pituitary homeobox 2 (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Homeobox protein PITX2) (Orthodenticle-like homeobox 2) (Paired-like homeodomain transcription factor 2) (Paired-like homeodomain transcription factor Munc 30) (Solurshin)
[Tenm1 Odz1 Tnm1] Teneurin-1 (Ten-1) (Protein Odd Oz/ten-m homolog 1) (Tenascin-M1) (Ten-m1) (Teneurin transmembrane protein 1) [Cleaved into: Ten-1 intracellular domain (IDten-1) (Ten-1 ICD); Teneurin C-terminal-associated peptide (TCPA-1) (Ten-1 extracellular domain) (Ten-1 ECD)]
[Prrx1 Pmx Pmx1] Paired mesoderm homeobox protein 1 (Homeobox protein K-2) (Homeobox protein mHox) (Paired-related homeobox protein 1) (PRX-1)
[PRRX1 PMX1] Paired mesoderm homeobox protein 1 (Homeobox protein PHOX1) (Paired-related homeobox protein 1) (PRX-1)
[Phox2b Pmx2b] Paired mesoderm homeobox protein 2B (Neuroblastoma Phox) (NBPhox) (PHOX2B homeodomain protein) (Paired-like homeobox 2B)
[Phox2a Arix Phox2 Pmx2 Pmx2a] Paired mesoderm homeobox protein 2A (Aristaless homeobox protein homolog) (PHOX2A homeodomain protein) (Paired-like homeobox 2A)
[PRRX1 MHOX PMX1 PRX1] Paired mesoderm homeobox protein 1 (GMHOX) (Homeobox protein MHOX) (Paired-related homeobox protein 1) (PRX-1)

Bibliography :
[29442316] Odd-Paired: The Drosophila Zic Gene.
[28791475] Regulation and function of odd-paired in Tribolium segmentation.
[26340333] Gain-of-Function Mutations in ZIC1 Are Associated with Coronal Craniosynostosis and Learning Disability.
[25699711] Zic2 is an enhancer-binding factor required for embryonic stem cell specification.
[23880430] Deciphering the onychophoran 'segmentation gene cascade': Gene expression reveals limited involvement of pair rule gene orthologs in segmentation, but a highly conserved segment polarity gene network.
[18248235] Ventralized zebrafish embryo rescue by overexpression of Zic2a.
[16336415] Pair rule gene orthologs in spider segmentation.
[15207846] The role of Zic genes in neural development.
[15136147] Mouse Zic5 deficiency results in neural tube defects and hypoplasia of cephalic neural crest derivatives.
[15102703] Ftz modulates Runt-dependent activation and repression of segment-polarity gene transcription.
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