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Pancreas transcription factor 1 subunit alpha (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)

 PTF1A_RAT               Reviewed;         326 AA.
Q64305;
02-MAY-2006, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
07-APR-2021, entry version 138.
RecName: Full=Pancreas transcription factor 1 subunit alpha;
AltName: Full=Pancreas-specific transcription factor 1a;
AltName: Full=bHLH transcription factor p48;
AltName: Full=p48 DNA-binding subunit of transcription factor PTF1;
Short=PTF1-p48;
Name=Ptf1a; Synonyms=Ptf1p48;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 2-18 AND 176-194, FUNCTION,
SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE.
TISSUE=Pancreas;
PubMed=8861960; DOI=10.1002/j.1460-2075.1996.tb00806.x;
Krapp A., Knoefler M., Frutiger S., Hughes G.J., Hagenbuechle O.,
Wellauer P.K.;
"The p48 DNA-binding subunit of transcription factor PTF1 is a new exocrine
pancreas-specific basic helix-loop-helix protein.";
EMBO J. 15:4317-4329(1996).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
STRAIN=Sprague-Dawley;
PubMed=8703005; DOI=10.1074/jbc.271.36.21993;
Knoefler M., Krapp A., Hagenbuechle O., Wellauer P.K.;
"Constitutive expression of the gene for the cell-specific p48 DNA-binding
subunit of pancreas transcription factor 1 in cultured cells is under
control of binding sites for transcription factors SP1 and alpha CBF.";
J. Biol. Chem. 271:21993-22002(1996).
[3]
FUNCTION IN PANCREAS DEVELOPMENT, AND TISSUE SPECIFICITY.
PubMed=10768861;
Adell T., Gomez-Cuadrado A., Skoudy A., Pettengill O.S., Longnecker D.S.,
Real F.X.;
"Role of the basic helix-loop-helix transcription factor p48 in the
differentiation phenotype of exocrine pancreas cancer cells.";
Cell Growth Differ. 11:137-147(2000).
-!- FUNCTION: Transcription factor implicated in the cell fate
determination in various organs. Binds to the E-box consensus sequence
5'-CANNTG-3'. Plays a role in early and late pancreas development and
differentiation. Important for determining whether cells allocated to
the pancreatic buds continue towards pancreatic organogenesis or revert
back to duodenal fates. May be involved in the maintenance of exocrine
pancreas-specific gene expression including ELA1 and amylase. Required
for the formation of pancreatic acinar and ductal cells. Plays an
important role in cerebellar development. Directly regulated by FOXN4
and RORC during retinal development, FOXN4-PTF1A pathway plays a
central role in directing the differentiation of retinal progenitors
towards horizontal and amacrine fates. {ECO:0000269|PubMed:10768861,
ECO:0000269|PubMed:8703005, ECO:0000269|PubMed:8861960}.
-!- SUBUNIT: Component of the pancreas transcription factor 1 complex
(PTF1) which is composed of TCF3/p75, TCF12/p64 and PTF1A/p48. TCF3 is
responsible for the nuclear import of the p48/p64 complex. Interacts
with TCF3 and RBPSUH/RBP-Jkappa (By similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981,
ECO:0000269|PubMed:8861960}. Cytoplasm {ECO:0000269|PubMed:8861960}.
Note=In the cytoplasm loses its ability to form the PTF1 complex.
-!- TISSUE SPECIFICITY: Exocrine pancreas-specific. Expressed in azaserine-
induced pancreatic tumors (at protein level). Expressed in AR42J cells
but not in ARIP, DSL6A, or DSL6B cells. Down-regulation is associated
with the change of an azaserine-induced acinar cell carcinoma to a
ductal phenotype. {ECO:0000269|PubMed:10768861}.
-!- DEVELOPMENTAL STAGE: Expressed from day 12 of gestation in pancreatic
structures. {ECO:0000269|PubMed:8861960}.
---------------------------------------------------------------------------
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EMBL; X98170; CAA66851.1; -; mRNA.
EMBL; X98446; CAA67076.1; -; Genomic_DNA.
PIR; S71755; S71755.
RefSeq; NP_446416.1; NM_053964.1.
SMR; Q64305; -.
BioGRID; 250633; 1.
CORUM; Q64305; -.
STRING; 10116.ENSRNOP00000022727; -.
PaxDb; Q64305; -.
PRIDE; Q64305; -.
Ensembl; ENSRNOT00000022727; ENSRNOP00000022727; ENSRNOG00000016902.
GeneID; 117034; -.
KEGG; rno:117034; -.
UCSC; RGD:621709; rat.
CTD; 256297; -.
RGD; 621709; Ptf1a.
eggNOG; KOG4029; Eukaryota.
GeneTree; ENSGT00940000161000; -.
HOGENOM; CLU_053709_0_0_1; -.
InParanoid; Q64305; -.
OMA; YRERACT; -.
OrthoDB; 1269550at2759; -.
PhylomeDB; Q64305; -.
TreeFam; TF315153; -.
PRO; PR:Q64305; -.
Proteomes; UP000002494; Chromosome 17.
Bgee; ENSRNOG00000016902; Expressed in pancreas and 4 other tissues.
Genevisible; Q64305; RN.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0005667; C:transcription regulator complex; IDA:UniProtKB.
GO; GO:0003682; F:chromatin binding; ISO:RGD.
GO; GO:0003677; F:DNA binding; IDA:UniProtKB.
GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; ISO:RGD.
GO; GO:0003700; F:DNA-binding transcription factor activity; TAS:RGD.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
GO; GO:0070888; F:E-box binding; ISO:RGD.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IDA:MGI.
GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; ISO:RGD.
GO; GO:1990837; F:sequence-specific double-stranded DNA binding; ISO:RGD.
GO; GO:0035881; P:amacrine cell differentiation; ISS:UniProtKB.
GO; GO:0030154; P:cell differentiation; ISO:RGD.
GO; GO:0045165; P:cell fate commitment; ISO:RGD.
GO; GO:0021549; P:cerebellum development; ISS:UniProtKB.
GO; GO:0032502; P:developmental process; IBA:GO_Central.
GO; GO:0031017; P:exocrine pancreas development; IDA:UniProtKB.
GO; GO:0048699; P:generation of neurons; ISS:UniProtKB.
GO; GO:0030902; P:hindbrain development; ISS:UniProtKB.
GO; GO:0048663; P:neuron fate commitment; ISO:RGD.
GO; GO:0031016; P:pancreas development; ISO:RGD.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; ISO:RGD.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0061074; P:regulation of neural retina development; ISS:UniProtKB.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0010842; P:retina layer formation; ISS:UniProtKB.
GO; GO:0060042; P:retina morphogenesis in camera-type eye; ISO:RGD.
GO; GO:0048384; P:retinoic acid receptor signaling pathway; ISS:UniProtKB.
GO; GO:0009888; P:tissue development; ISS:UniProtKB.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
1: Evidence at protein level;
Cytoplasm; Developmental protein; Differentiation;
Direct protein sequencing; DNA-binding; Neurogenesis; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1..326
/note="Pancreas transcription factor 1 subunit alpha"
/id="PRO_0000233145"
DOMAIN 162..214
/note="bHLH"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
COMPBIAS 140..148
/note="Poly-Ala"
SEQUENCE 326 AA; 35305 MW; E06D0132390E429F CRC64;
MDAVLLEHFP GALDTFPSSY FDEEDFFTDQ SSRDPLEDGD ELLGDEQAEV EFLSHQLHEY
CYRDGACLLL QPAPSAAPHA LAPPPLGDPG EPEDSGSYCC DAGAPLGAFP YSPGSPPSCL
AYPCTAVLSP GTRLRGLNGA AAAAAAAARR RRRVRSEAEL QQLRQAANVR ERRRMQSIND
AFEGLRSHIP TLPYEKRLSK VDTLRLAIGY INFLSELVQA DLPLRGSGTG GCGGPGGSRH
LGGDSPGNQA QKVIICHRGT RSPSPSDPDY GLPPLAGHSL SWADEKQLKE QNIIRTAKVW
TPEDPRKLNS KSFDNIENEP PFEFVS


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WP1541: Energy Metabolism
WP313: Signaling of Hepatocyte Growth Factor Receptor
WP177: Eukaryotic Transcription Initiation
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WP1822: Generic Transcription Pathway
WP344: Eukaryotic Transcription Initiation
WP425: Eukaryotic Transcription Initiation
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WP94: Signaling of Hepatocyte Growth Factor Receptor
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WP1930: Transcription
WP1162: Signaling of Hepatocyte Growth Factor Receptor
WP1206: Signaling of Hepatocyte Growth Factor Receptor
WP830: Eukaryotic Transcription Initiation
WP405: Eukaryotic Transcription Initiation
WP444: Signaling of Hepatocyte Growth Factor Receptor
WP1046: Signaling of Hepatocyte Growth Factor Receptor
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[Ptf1a Ptf1p48] Pancreas transcription factor 1 subunit alpha (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[Ptf1a Ptf1p48] Pancreas transcription factor 1 subunit alpha (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[PTF1A BHLHA29 PTF1P48] Pancreas transcription factor 1 subunit alpha (Class A basic helix-loop-helix protein 29) (bHLHa29) (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[Tcf3 Pan Ptf1c Tcfe2a] Transcription factor E2-alpha (Immunoglobulin enhancer-binding factor E12/E47) (Pancreas specific transcription factor 1c) (Transcription factor 3) (TCF-3) (Transcription regulator Pan)
[Tcf3 Alf2 Me2 Tcfe2a] Transcription factor E2-alpha (Immunoglobulin enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Transcription factor A1)
[Tcf12 Alf1 Meb] Transcription factor 12 (TCF-12) (Class A helix-loop-helix transcription factor ME1) (DNA-binding protein HTF4) (E-box-binding protein) (Transcription factor HTF-4)
[EIF3E EIF3S6 INT6] Eukaryotic translation initiation factor 3 subunit E (eIF3e) (Eukaryotic translation initiation factor 3 subunit 6) (Viral integration site protein INT-6 homolog) (eIF-3 p48)
[DDB2] DNA damage-binding protein 2 (DDB p48 subunit) (DDBb) (Damage-specific DNA-binding protein 2) (UV-damaged DNA-binding protein 2) (UV-DDB 2)
[IRF9 ISGF3G] Interferon regulatory factor 9 (IRF-9) (IFN-alpha-responsive transcription factor subunit) (ISGF3 p48 subunit) (Interferon-stimulated gene factor 3 gamma) (ISGF-3 gamma) (Transcriptional regulator ISGF3 subunit gamma)
[RBBP4 RBAP48] Histone-binding protein RBBP4 (Chromatin assembly factor 1 subunit C) (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-I p48) (Nucleosome-remodeling factor subunit RBAP48) (Retinoblastoma-binding protein 4) (RBBP-4) (Retinoblastoma-binding protein p48)
[Rbbp4 Rbap48] Histone-binding protein RBBP4 (Chromatin assembly factor 1 subunit C) (CAF-1 subunit C) (Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-I p48) (Nucleosome-remodeling factor subunit RBAP48) (Retinoblastoma-binding protein 4) (RBBP-4) (Retinoblastoma-binding protein p48)
[Epop E13] Elongin BC and Polycomb repressive complex 2-associated protein (Embryonic stem cell-specific PRC2 subunit p48) (ES cell-specific PRC2 subunit p48) (esPRC2p48)
[ESS1 PIN1 PTF1 YJR017C J1452] Peptidyl-prolyl cis-trans isomerase ESS1 (PPIase ESS1) (EC 5.2.1.8) (Parvulin ESS1) (Processing/termination factor 1)
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[] 3C-like proteinase (EC 2.7.7.48) (EC 3.4.19.12) (EC 3.6.4.12) (EC 3.6.4.13) (Exoribonuclease) (Growth factor-like peptide) (Helicase) (M-PRO) (NendoU) (Non-structural protein 1) (Non-structural protein 10) (Non-structural protein 2) (Non-structural protein 3) (Non-structural protein 4) (Non-structural protein 6) (Non-structural protein 7) (Non-structural protein 8) (Non-structural protein 9) (ORF1ab polyprotein) (PL1-PRO/PL2-PRO) (PLP1/PLP2) (Papain-like proteinases 1/2) (Peptide HD2) (Putative 2'-O-methyl transferase) (RNA-directed RNA polymerase) (Replicase polyprotein 1ab) (Uridylate-specific endoribonuclease) (nsp15) (nsp16) (nsp5) (p195)
[Tcf12] Transcription factor 12 (TCF-12) (DNA-binding protein HTF4) (E-box-binding protein) (Salivary-specific cAMP response element-binding protein alpha) (SCBP-alpha) (Transcription factor HTF-4)
[TCF3 BHLHB21 E2A ITF1] Transcription factor E2-alpha (Class B basic helix-loop-helix protein 21) (bHLHb21) (Immunoglobulin enhancer-binding factor E12/E47) (Immunoglobulin transcription factor 1) (Kappa-E2-binding factor) (Transcription factor 3) (TCF-3) (Transcription factor ITF-1)
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[PDX1 IPF1 STF1] Pancreas/duodenum homeobox protein 1 (PDX-1) (Glucose-sensitive factor) (GSF) (Insulin promoter factor 1) (IPF-1) (Insulin upstream factor 1) (IUF-1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1)
[TCF3 PAN] Transcription factor E2-alpha (Immunoglobulin-enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Transcription regulator Pan)
[HNF1A TCF1] Hepatocyte nuclear factor 1-alpha (HNF-1-alpha) (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1)
[S] Spike glycoprotein (S glycoprotein) (E2) (Peplomer protein) [Cleaved into: Spike protein S1; Spike protein S2; Spike protein S2']
[TCF12 BHLHB20 HEB HTF4] Transcription factor 12 (TCF-12) (Class B basic helix-loop-helix protein 20) (bHLHb20) (DNA-binding protein HTF4) (E-box-binding protein) (Transcription factor HTF-4)
[tfg3 taf14 SPAC22H12.02] Transcription initiation factor TFIID subunit 14 (SWI/SNF chromatin-remodeling complex subunit tfg3) (SWI/SNF complex subunit tfg3) (TBP-associated factor 14) (TBP-associated factor 30 kDa) (Transcription factor G 30 kDa subunit) (Transcription initiation factor TFIIF 30 kDa subunit)
[TAF1A] TATA box-binding protein-associated factor RNA polymerase I subunit A (RNA polymerase I-specific TBP-associated factor 48 kDa) (TAFI48) (TATA box-binding protein-associated factor 1A) (TBP-associated factor 1A) (Transcription factor SL1) (Transcription initiation factor SL1/TIF-IB subunit A)
[DDB1 XAP1] DNA damage-binding protein 1 (DDB p127 subunit) (DNA damage-binding protein a) (DDBa) (Damage-specific DNA-binding protein 1) (HBV X-associated protein 1) (XAP-1) (UV-damaged DNA-binding factor) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (XPE-binding factor) (XPE-BF) (Xeroderma pigmentosum group E-complementing protein) (XPCe)
[RUNX2 AML3 CBFA1 OSF2 PEBP2A] Runt-related transcription factor 2 (Acute myeloid leukemia 3 protein) (Core-binding factor subunit alpha-1) (CBF-alpha-1) (Oncogene AML-3) (Osteoblast-specific transcription factor 2) (OSF-2) (Polyomavirus enhancer-binding protein 2 alpha A subunit) (PEA2-alpha A) (PEBP2-alpha A) (SL3-3 enhancer factor 1 alpha A subunit) (SL3/AKV core-binding factor alpha A subunit)
[PBX1 PRL] Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL)
[Ybx1 Msy-1 Msy1 Nsep1 Yb1] Y-box-binding protein 1 (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Nuclease-sensitive element-binding protein 1) (Y-box transcription factor)
[Rbpj Igkjrb1 Igkrsbp Rbpsuh] Recombining binding protein suppressor of hairless (J kappa-recombination signal-binding protein) (RBP-J kappa)

Bibliography :