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Protein CASPARIAN STRIP INTEGRITY FACTOR 2

 CIF2_ARATH              Reviewed;          83 AA.
O65684;
12-APR-2017, integrated into UniProtKB/Swiss-Prot.
01-AUG-1998, sequence version 1.
16-JAN-2019, entry version 119.
RecName: Full=Protein CASPARIAN STRIP INTEGRITY FACTOR 2 {ECO:0000303|PubMed:28104889};
Flags: Precursor;
Name=CIF2 {ECO:0000303|PubMed:28104889};
OrderedLocusNames=At4g34600 {ECO:0000312|Araport:AT4G34600};
ORFNames=T4L20.180 {ECO:0000312|EMBL:CAA18839.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, DEVELOPMENTAL
STAGE, INTERACTION WITH GSO1 AND GSO2, AND INDUCTION BY IRON.
PubMed=28104889; DOI=10.1126/science.aai9057;
Nakayama T., Shinohara H., Tanaka M., Baba K., Ogawa-Ohnishi M.,
Matsubayashi Y.;
"A peptide hormone required for Casparian strip diffusion barrier
formation in Arabidopsis roots.";
Science 355:284-286(2017).
-!- FUNCTION: Peptide hormone required for contiguous Casparian strip
diffusion barrier formation in roots via the regulation of CASPs
protein expression and distribution in a GSO1-GSO2 signaling
pathway. The Casparian strip is required for ion homeostasis (e.g.
iron and potassium ions). {ECO:0000269|PubMed:28104889}.
-!- SUBUNIT: Interacts with the specific receptor kinases GSO1 and
GSO2. {ECO:0000269|PubMed:28104889}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=1;
Comment=Additional isoforms seem to exist.
{ECO:0000312|Araport:AT4G34600};
Name=1;
IsoId=O65684-1; Sequence=Displayed;
-!- TISSUE SPECIFICITY: Expressed exclusively in the root stele.
{ECO:0000269|PubMed:28104889}.
-!- DEVELOPMENTAL STAGE: Confined to the root stele in the elongation
and differentiation zones of both primary and lateral roots.
Disappears at the sites of lateral root initiation. In the root
tip, present at and above approximately 10 cells after the onset
of elongation. {ECO:0000269|PubMed:28104889}.
-!- INDUCTION: Induced by excess iron and further synergistically
regulated by lowering the medium pH.
{ECO:0000269|PubMed:28104889}.
-!- DISRUPTION PHENOTYPE: Abnormal endodermal barrier formation in
cif2-1. The double mutant cif1-1 cif2-1 is defective in ion
homeostasis in the xylem due to defect in endodermal barrier
formation in the roots. Highly sensitive to excess iron. Retarded
growth under low-potassium conditions. Repeatedly interrupted,
discontinuous Casparian strip due to patch-like localization of
the CASPs proteins. Reduced rosette leaf size.
{ECO:0000269|PubMed:28104889}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AL023094; CAA18839.1; -; Genomic_DNA.
EMBL; AL161585; CAB80177.1; -; Genomic_DNA.
EMBL; CP002687; AEE86398.1; -; Genomic_DNA.
EMBL; BT010809; AAR24176.1; -; mRNA.
EMBL; BT014676; AAT35234.1; -; mRNA.
PIR; T05280; T05280.
RefSeq; NP_195186.1; NM_119626.4. [O65684-1]
UniGene; At.27648; -.
UniGene; At.75091; -.
STRING; 3702.AT4G34600.1; -.
PaxDb; O65684; -.
EnsemblPlants; AT4G34600.1; AT4G34600.1; AT4G34600. [O65684-1]
GeneID; 829612; -.
Gramene; AT4G34600.1; AT4G34600.1; AT4G34600. [O65684-1]
KEGG; ath:AT4G34600; -.
Araport; AT4G34600; -.
TAIR; locus:2139604; AT4G34600.
eggNOG; ENOG410J5ER; Eukaryota.
eggNOG; ENOG410ZFRP; LUCA.
HOGENOM; HOG000237739; -.
InParanoid; O65684; -.
OMA; MRDYGKY; -.
OrthoDB; 1646713at2759; -.
PhylomeDB; O65684; -.
PRO; PR:O65684; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; O65684; baseline and differential.
GO; GO:0048226; C:Casparian strip; IMP:UniProtKB.
GO; GO:0005179; F:hormone activity; IEA:UniProtKB-KW.
GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
GO; GO:0050801; P:ion homeostasis; IMP:UniProtKB.
GO; GO:0055072; P:iron ion homeostasis; IMP:UniProtKB.
GO; GO:0007275; P:multicellular organism development; IEA:UniProtKB-KW.
GO; GO:0009860; P:pollen tube growth; IEP:TAIR.
GO; GO:2000067; P:regulation of root morphogenesis; IMP:UniProtKB.
GO; GO:0010447; P:response to acidic pH; IEP:UniProtKB.
GO; GO:0010039; P:response to iron ion; IEP:UniProtKB.
InterPro; IPR038974; CIF1/2.
PANTHER; PTHR35290; PTHR35290; 1.
1: Evidence at protein level;
Alternative splicing; Cell wall biogenesis/degradation;
Complete proteome; Developmental protein; Hormone; Hydroxylation;
Reference proteome; Signal; Sulfation.
SIGNAL 1 28 {ECO:0000255}.
CHAIN 29 83 Protein CASPARIAN STRIP INTEGRITY FACTOR
2.
/FTId=PRO_5009340946.
MOD_RES 64 64 Sulfotyrosine.
{ECO:0000250|UniProtKB:Q84MD2}.
MOD_RES 69 69 Hydroxyproline.
{ECO:0000250|UniProtKB:Q84MD2}.
MOD_RES 71 71 Hydroxyproline.
{ECO:0000250|UniProtKB:Q84MD2}.
SEQUENCE 83 AA; 9437 MW; 6AA23972D835DA13 CRC64;
MGLLPLVKKL GFIIFLLVSA SAFALCSAGR SSILIYSQED DHPEVVERRI HEHERILRMN
SRDYGHSSPK PKLVRPPFKL IPN


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Pathways :
WP1371: G Protein Signaling Pathways
WP100: Glutathione metabolism
WP1039: Glutathione metabolism
WP104: Alanine and aspartate metabolism
WP1046: Signaling of Hepatocyte Growth Factor Receptor
WP1049: G Protein Signaling Pathways
WP106: Alanine and aspartate metabolism
WP1126: Tryptophan metabolism
WP1162: Signaling of Hepatocyte Growth Factor Receptor
WP1165: G Protein Signaling Pathways
WP1206: Signaling of Hepatocyte Growth Factor Receptor
WP1235: Signaling of Hepatocyte Growth Factor Receptor
WP1313: Insulin Signaling
WP1321: Myometrial Relaxation and Contraction Pathways
WP1323: EGFR1 Signaling Pathway
WP1329: Alpha6-Beta4 Integrin Signaling Pathway
WP1333: Hypothetical Network for Drug Addiction
WP1344: Wnt Signaling Pathway and Pluripotency
WP1345: T Cell Receptor Signaling Pathway
WP1348: Androgen Receptor Signaling Pathway
WP1354: B Cell Receptor Signaling Pathway
WP1355: One Carbon Metabolism
WP1362: Homologous recombination
WP1363: p38 MAPK Signaling Pathway
WP1365: Calcium Regulation in the Cardiac Cell

Related Genes :
[CIF2 At4g34600 T4L20.180] Protein CASPARIAN STRIP INTEGRITY FACTOR 2
[CIF1 At2g16385 F16F14] Protein CASPARIAN STRIP INTEGRITY FACTOR 1
[CASP1 At2g36100 F9C22.3] Casparian strip membrane protein 1 (AtCASP1)
[CASP3 At2g27370 F10A12.5 F12K2.5] Casparian strip membrane protein 3 (AtCASP3)
[CASP2 At3g11550 F24K9.22] Casparian strip membrane protein 2 (AtCASP2)
[CASP5 At5g15290 F8M21_180] Casparian strip membrane protein 5 (AtCASP5)
[CASP4 At5g06200 MBL20.8] Casparian strip membrane protein 4 (AtCASP4)
[MYB36 At5g57620 MUA2.20] Transcription factor MYB36 (Myb-related protein 36) (AtMYB36)
[MID2 KAI1 SMS1 YLR332W L8543.19] Cell wall integrity sensor MID2 (Mating pheromone-induced death protein 2) (Protein kinase A interference protein 1) (Serine-rich multicopy suppressor protein 1)
[GSO1 SGN3 At4g20140 F1C12.60] LRR receptor-like serine/threonine-protein kinase GSO1 (EC 2.7.11.1) (Protein GASSHO 1) (Protein SCHENGEN 3)
[disA comY orf6 yacK BSU00880] DNA integrity scanning protein DisA (Cyclic di-AMP synthase) (c-di-AMP synthase) (Diadenylate cyclase) (DAC) (EC 2.7.7.85)
[GSO2 EDA23 At5g44700 K23L20.3] LRR receptor-like serine/threonine-protein kinase GSO2 (EC 2.7.11.1) (Protein EMBRYO SAC DEVELOPMENT ARREST 23) (Protein GASSHO 2)
[Eif2ak2 Pkr Prkr Tik] Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.11.1) (Eukaryotic translation initiation factor 2-alpha kinase 2) (eIF-2A protein kinase 2) (Interferon-inducible RNA-dependent protein kinase) (P1/eIF-2A protein kinase) (Protein kinase RNA-activated) (PKR) (Protein kinase R) (Serine/threonine-protein kinase TIK) (Tyrosine-protein kinase EIF2AK2) (EC 2.7.10.2) (p68 kinase)
[rep 1a-1b] Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Host translation inhibitor nsp1 (nsp1) (Leader protein); Non-structural protein 2 (nsp2) (p65 homolog); Papain-like proteinase (PL-PRO) (EC 3.4.19.12) (EC 3.4.22.69) (Non-structural protein 3) (nsp3) (PL2-PRO) (SARS coronavirus main proteinase); Non-structural protein 4 (nsp4); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (nsp5); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-structural protein 8 (nsp8); Non-structural protein 9 (nsp9); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (nsp12); Helicase (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (nsp13); Guanine-N7 methyltransferase (ExoN) (EC 2.1.1.-) (EC 3.1.13.-) (nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU) (nsp15); 2'-O-methyltransferase (EC 2.1.1.-) (nsp16)]
[disA MSMEG_6080 MSMEI_5920] DNA integrity scanning protein DisA (Cyclic-di-AMP synthase) (c-di-AMP synthase) (Diadenylate cyclase) (EC 2.7.7.85)
[rep 1a-1b] Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Host translation inhibitor nsp1 (nsp1) (p28); Non-structural protein 2 (nsp2) (p65); Papain-like proteinase (PL-PRO) (EC 3.4.19.12) (EC 3.4.22.69) (Non-structural protein 3) (nsp3) (p210); Non-structural protein 4 (nsp4) (Peptide HD2) (p44); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (M-PRO) (nsp5) (p27); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7) (p10); Non-structural protein 8 (nsp8) (p22); Non-structural protein 9 (nsp9) (p12); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL) (p15); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (nsp12) (p100); Helicase (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (nsp13) (p67); Guanine-N7 methyltransferase (ExoN) (EC 2.1.1.-) (EC 3.1.13.-) (nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU) (nsp15) (p35); 2'-O-methyltransferase (EC 2.1.1.-) (nsp16)]
[disA TM_0200] DNA integrity scanning protein DisA (Cyclic di-AMP synthase) (c-di-AMP synthase) (Diadenylate cyclase) (EC 2.7.7.85)
[rep 1a-1b] Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Host translation inhibitor nsp1 (nsp1) (p28); Non-structural protein 2 (nsp2) (p65); Papain-like proteinase (PL-PRO) (EC 3.4.19.12) (EC 3.4.22.69) (Non-structural protein 3) (nsp3) (p210); Non-structural protein 4 (nsp4) (Peptide HD2) (p44); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (M-PRO) (nsp5) (p27); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7) (p10); Non-structural protein 8 (nsp8) (p22); Non-structural protein 9 (nsp9) (p12); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL) (p15); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (nsp12) (p100); Helicase (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (nsp13) (p67); Guanine-N7 methyltransferase (ExoN) (EC 2.1.1.-) (EC 3.1.13.-) (nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU) (nsp15) (p35); 2'-O-methyltransferase (EC 2.1.1.-) (nsp16)]
[Tnf Tnfa Tnfsf2] Tumor necrosis factor (Cachectin) (TNF-alpha) (Tumor necrosis factor ligand superfamily member 2) (TNF-a) [Cleaved into: Tumor necrosis factor, membrane form (N-terminal fragment) (NTF); Intracellular domain 1 (ICD1); Intracellular domain 2 (ICD2); C-domain 1; C-domain 2; Tumor necrosis factor, soluble form]
[ARFGEF2 ARFGEP2 BIG2] Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (Brefeldin A-inhibited GEP 2) (ADP-ribosylation factor guanine nucleotide-exchange factor 2)
[STRIP1 FAM40A KIAA1761] Striatin-interacting protein 1 (Protein FAM40A)
[Runx2 Aml3 Cbfa1 Osf2 Pebp2a] Runt-related transcription factor 2 (Acute myeloid leukemia 3 protein) (Core-binding factor subunit alpha-1) (CBF-alpha-1) (Oncogene AML-3) (Osteoblast-specific transcription factor 2) (OSF-2) (Polyomavirus enhancer-binding protein 2 alpha A subunit) (PEA2-alpha A) (PEBP2-alpha A) (SL3-3 enhancer factor 1 alpha A subunit) (SL3/AKV core-binding factor alpha A subunit)
[PIF4 BHLH9 EN102 SRL2 At2g43010 MFL8.13] Transcription factor PIF4 (Basic helix-loop-helix protein 9) (AtbHLH9) (bHLH 9) (Phytochrome-interacting factor 4) (Short under red-light 2) (Transcription factor EN 102) (bHLH transcription factor bHLH009)
[STRIP2 FAM40B KIAA1170] Striatin-interacting protein 2 (Protein FAM40B)
[SLG1 WSC1 YOR008C UNF378] Protein SLG1 (Cell wall integrity and stress response component 1) (Synthetic lethal with GAP protein 1)
[] Genome polyprotein [Cleaved into: Protein VP0 (VP4-VP2); Protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Protein VP1-2A (VPX); Capsid protein VP1 (P1D) (Virion protein 1); Assembly signal 2A (pX); Protein 2BC; Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3ABCD (P3); Protein 3ABC; Protein 3AB; Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD; Protease 3C (P3C) (EC 3.4.22.28) (Picornain 3C); RNA-directed RNA polymerase 3D-POL (P3D-POL) (EC 2.7.7.48)]
[ZFP36L2 BRF2 ERF2 RNF162C TIS11D] mRNA decay activator protein ZFP36L2 (Butyrate response factor 2) (EGF-response factor 2) (ERF-2) (TPA-induced sequence 11d) (Zinc finger protein 36, C3H1 type-like 2) (ZFP36-like 2)
[Nfe2l2 Nrf-2 Nrf2] Nuclear factor erythroid 2-related factor 2 (NF-E2-related factor 2) (NFE2-related factor 2) (Nuclear factor, erythroid derived 2, like 2)
[ARALYDRAFT_482586] Casparian strip membrane protein 1 (AlCASP1)
[Zfp36l2 Brf2 Tis11d] mRNA decay activator protein ZFP36L2 (Butyrate response factor 2) (TPA-induced sequence 11d) (Zinc finger protein 36, C3H1 type-like 2) (ZFP36-like 2)

Bibliography :
[28104888] Root diffusion barrier control by a vasculature-derived peptide binding to the SGN3 receptor.
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