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Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A)

 YIPF5_MOUSE             Reviewed;         257 AA.
Q9EQQ2;
16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
13-FEB-2019, entry version 111.
RecName: Full=Protein YIPF5;
AltName: Full=YIP1 family member 5;
AltName: Full=YPT-interacting protein 1 A;
Name=Yipf5; Synonyms=Yip1a;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
PubMed=11489904; DOI=10.1074/jbc.M106189200;
Tang B.L., Ong Y.S., Huang B., Wei S., Wong E.T., Qi R., Horstmann H.,
Hong W.;
"A membrane protein enriched in endoplasmic reticulum exit sites
interacts with COPII.";
J. Biol. Chem. 276:40008-40017(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Bone marrow, Placenta, and Tongue;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=129; TISSUE=Eye, and Mammary tumor;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
SUBCELLULAR LOCATION.
PubMed=15254263; DOI=10.1091/mbc.E03-11-0822;
Kano F., Tanaka A.R., Yamauchi S., Kondo H., Murata M.;
"Cdc2 kinase-dependent disassembly of endoplasmic reticulum (ER) exit
sites inhibits ER-to-Golgi vesicular transport during mitosis.";
Mol. Biol. Cell 15:4289-4298(2004).
[5]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Pancreas;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Plays a role in transport between endoplasmic reticulum
and Golgi. {ECO:0000250|UniProtKB:Q969M3}.
-!- SUBUNIT: Interacts with the COPII coat components Sec23 (SEC23A
and/or SEC23B) and Sec24 (SEC24A and/or SEC24B) (By similarity).
Interacts with YIF1A (By similarity). May interact with RAB1A (By
similarity). Interacts with YIPF3 and YIPF4 (By similarity).
{ECO:0000250|UniProtKB:Q969M3}.
-!- SUBCELLULAR LOCATION: Golgi apparatus, cis-Golgi network membrane
{ECO:0000269|PubMed:15254263}; Multi-pass membrane protein
{ECO:0000269|PubMed:15254263}. Cytoplasmic vesicle, COPII-coated
vesicle {ECO:0000250|UniProtKB:Q5XID0}. Endoplasmic reticulum
membrane {ECO:0000269|PubMed:15254263}; Multi-pass membrane
protein {ECO:0000269|PubMed:15254263}. Note=Incorporated into
COPII coated vesicles (By similarity). Enriched at the endoplasmic
reticulum exit sites. {ECO:0000250}.
-!- TISSUE SPECIFICITY: Ubiquitously expressed.
{ECO:0000269|PubMed:11489904}.
-!- SIMILARITY: Belongs to the YIP1 family. {ECO:0000305}.
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EMBL; AF140226; AAG48522.1; -; mRNA.
EMBL; AK010089; BAB26694.1; -; mRNA.
EMBL; AK151425; BAE30389.1; -; mRNA.
EMBL; AK151461; BAE30419.1; -; mRNA.
EMBL; AK152440; BAE31221.1; -; mRNA.
EMBL; AK153123; BAE31738.1; -; mRNA.
EMBL; AK160004; BAE35552.1; -; mRNA.
EMBL; AK167526; BAE39596.1; -; mRNA.
EMBL; BC003317; AAH03317.1; -; mRNA.
EMBL; BC055301; AAH55301.1; -; mRNA.
CCDS; CCDS29207.1; -.
RefSeq; NP_075800.1; NM_023311.3.
UniGene; Mm.270382; -.
ProteinModelPortal; Q9EQQ2; -.
STRING; 10090.ENSMUSP00000025364; -.
iPTMnet; Q9EQQ2; -.
PhosphoSitePlus; Q9EQQ2; -.
EPD; Q9EQQ2; -.
jPOST; Q9EQQ2; -.
MaxQB; Q9EQQ2; -.
PaxDb; Q9EQQ2; -.
PeptideAtlas; Q9EQQ2; -.
PRIDE; Q9EQQ2; -.
Ensembl; ENSMUST00000025364; ENSMUSP00000025364; ENSMUSG00000024487.
GeneID; 67180; -.
KEGG; mmu:67180; -.
UCSC; uc008etd.1; mouse.
CTD; 81555; -.
MGI; MGI:1914430; Yipf5.
eggNOG; KOG3103; Eukaryota.
eggNOG; COG5080; LUCA.
GeneTree; ENSGT00940000153168; -.
HOGENOM; HOG000037706; -.
HOVERGEN; HBG055241; -.
InParanoid; Q9EQQ2; -.
KO; K20363; -.
OMA; FDNLNTD; -.
OrthoDB; 1457080at2759; -.
PhylomeDB; Q9EQQ2; -.
TreeFam; TF313100; -.
PRO; PR:Q9EQQ2; -.
Proteomes; UP000000589; Chromosome 18.
Bgee; ENSMUSG00000024487; Expressed in 296 organ(s), highest expression level in lacrimal gland.
Genevisible; Q9EQQ2; MM.
GO; GO:0030134; C:COPII-coated ER to Golgi transport vesicle; IDA:MGI.
GO; GO:0005783; C:endoplasmic reticulum; ISO:MGI.
GO; GO:0070971; C:endoplasmic reticulum exit site; IDA:MGI.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0005794; C:Golgi apparatus; ISO:MGI.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0043231; C:intracellular membrane-bounded organelle; ISO:MGI.
GO; GO:0042175; C:nuclear outer membrane-endoplasmic reticulum membrane network; IDA:MGI.
GO; GO:0005654; C:nucleoplasm; ISO:MGI.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IMP:MGI.
GO; GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
InterPro; IPR006977; Yip1.
Pfam; PF04893; Yip1; 1.
1: Evidence at protein level;
Complete proteome; Cytoplasmic vesicle; Endoplasmic reticulum;
ER-Golgi transport; Golgi apparatus; Membrane; Protein transport;
Reference proteome; Transmembrane; Transmembrane helix; Transport.
CHAIN 1 257 Protein YIPF5.
/FTId=PRO_0000234330.
TOPO_DOM 1 124 Cytoplasmic.
{ECO:0000250|UniProtKB:Q969M3}.
TRANSMEM 125 145 Helical. {ECO:0000255}.
TOPO_DOM 146 146 Lumenal. {ECO:0000305}.
TRANSMEM 147 167 Helical. {ECO:0000255}.
TOPO_DOM 168 173 Cytoplasmic. {ECO:0000305}.
TRANSMEM 174 194 Helical. {ECO:0000255}.
TOPO_DOM 195 196 Lumenal. {ECO:0000305}.
TRANSMEM 197 217 Helical. {ECO:0000255}.
TOPO_DOM 218 236 Cytoplasmic. {ECO:0000305}.
TRANSMEM 237 257 Helical. {ECO:0000255}.
REGION 75 106 Interaction with Sec23. {ECO:0000250}.
SEQUENCE 257 AA; 27873 MW; 792206E7E4B39190 CRC64;
MSGFDNLNSG FYQTSYSIDE QSQQSYDYGG SGGPYSKQYA GCDYSQQGRF VPPDMMQPQQ
TYTGQIYQPT QAYPPTTPQP FYGDSFEEEP PLLEELGINF DHIWQKTLTV LHPLRAADGS
IMNETDLAGP VVFCLAFGAT LLLAGKIQFG YVYGISAIGC LGMFCLLNLM SMTGVSFGCV
ASVLGYCLLP MILLSSFAVV FSLQGMVGIL LTATIIGWCS FSASKIFISA LAMDGQQLLV
AYPCALLYGV FALISVF


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Pathways :
WP1909: Signal regulatory protein (SIRP) family interactions
WP1049: G Protein Signaling Pathways
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1531: Vitamin D synthesis
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
WP1661: Glyoxylate and dicarboxylate metabolism
WP1663: Homologous recombination
WP1665: Limonene and pinene degradation
WP1672: Mismatch repair
WP1673: Naphthalene and anthracene degradation
WP1675: Nitrogen metabolism
WP1676: Non-homologous end-joining

Related Genes :
[YIPF5 FINGER5 YIP1A PP12723 SB140 UNQ3123/PRO10275] Protein YIPF5 (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5) (YIP1 family member 5) (YPT-interacting protein 1 A)
[Yipf5 Yip1a] Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A)
[Yipf5 Yip1a] Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A)
[YIPF3 C6orf109 KLIP1] Protein YIPF3 (Killer lineage protein 1) (Natural killer cell-specific antigen KLIP1) (YIP1 family member 3) [Cleaved into: Protein YIPF3, 36 kDa form III]
[YIPF5] Protein YIPF5 (YIP1 family member 5)
[YIPF5] Protein YIPF5 (YIP1 family member 5)
[YIPF5 QccE-13521] Protein YIPF5 (YIP1 family member 5)
[YIPF6] Protein YIPF6 (YIP1 family member 6)
[RAB1A RAB1] Ras-related protein Rab-1A
[YPT1 YP2 YFL038C] GTP-binding protein YPT1 (Protein YP2) (Rab GTPase YPT1) (Transport GTPase YPT1)
[Yipf6] Protein YIPF6 (YIP1 family member 6)
[YIPF7 FINGER9 YIP1B] Protein YIPF7 (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 9) (YIP1 family member 7)
[SEC22 SLY2 TSL26 YLR268W L8479.3] Protein transport protein SEC22 (Suppressor of loss of YPT1 protein 2)
[Yipf6] Protein YIPF6 (YIP1 family member 6)
[YIPF6] Protein YIPF6 (YIP1 family member 6)
[BOS1 YLR078C L9449.9] Protein transport protein BOS1 (Bet one suppressor 1)
[PLEKHO1 CKIP1 OC120 HQ0024c] Pleckstrin homology domain-containing family O member 1 (PH domain-containing family O member 1) (C-Jun-binding protein) (JBP) (Casein kinase 2-interacting protein 1) (CK2-interacting protein 1) (CKIP-1) (Osteoclast maturation-associated gene 120 protein)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[WIPF1 WASPIP WIP] WAS/WASL-interacting protein family member 1 (Protein PRPL-2) (Wiskott-Aldrich syndrome protein-interacting protein) (WASP-interacting protein)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[APBA1 MINT1 X11] Amyloid-beta A4 precursor protein-binding family A member 1 (Adapter protein X11alpha) (Neuron-specific X11 protein) (Neuronal Munc18-1-interacting protein 1) (Mint-1)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); Viroporin p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[APBA3 MINT3 X11L2] Amyloid-beta A4 precursor protein-binding family A member 3 (Adapter protein X11gamma) (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3)
[Wipf1 Waspip Wip] WAS/WASL-interacting protein family member 1 (Wiskott-Aldrich syndrome protein-interacting protein) (WASP-interacting protein)
[Wipf1 Waspip Wip] WAS/WASL-interacting protein family member 1 (Wiskott-Aldrich syndrome protein-interacting protein) (WASP-interacting protein)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[ARL6IP5 DERP11 JWA PRA2 PRAF3 HSPC127] PRA1 family protein 3 (ADP-ribosylation factor-like protein 6-interacting protein 5) (ARL-6-interacting protein 5) (Aip-5) (Cytoskeleton-related vitamin A-responsive protein) (Dermal papilla-derived protein 11) (GTRAP3-18) (Glutamate transporter EAAC1-interacting protein) (JM5) (Prenylated Rab acceptor protein 2) (Protein JWa) (Putative MAPK-activating protein PM27)
[SLC22A18 BWR1A BWSCR1A HET IMPT1 ITM ORCTL2 SLC22A1L TSSC5] Solute carrier family 22 member 18 (Beckwith-Wiedemann syndrome chromosomal region 1 candidate gene A protein) (Efflux transporter-like protein) (Imprinted multi-membrane-spanning polyspecific transporter-related protein 1) (Organic cation transporter-like protein 2) (ORCTL-2) (Solute carrier family 22 member 1-like) (Tumor-suppressing STF cDNA 5 protein) (Tumor-suppressing subchromosomal transferable fragment candidate gene 5 protein) (p45-Beckwith-Wiedemann region 1 A) (p45-BWR1A)

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