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Putative ATP-dependent RNA helicase DDX47 (Fragment)

 A0A0V0YC56_TRIPS        Unreviewed;       459 AA.
A0A0V0YC56;
16-MAR-2016, integrated into UniProtKB/TrEMBL.
16-MAR-2016, sequence version 1.
20-DEC-2017, entry version 7.
SubName: Full=Putative ATP-dependent RNA helicase DDX47 {ECO:0000313|EMBL:KRX97552.1};
Flags: Fragment;
Name=DDX47 {ECO:0000313|EMBL:KRX97552.1};
ORFNames=T4E_4334 {ECO:0000313|EMBL:KRX97552.1};
Trichinella pseudospiralis (Parasitic roundworm).
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
Trichinellida; Trichinellidae; Trichinella.
NCBI_TaxID=6337 {ECO:0000313|EMBL:KRX97552.1, ECO:0000313|Proteomes:UP000054815};
[1] {ECO:0000313|EMBL:KRX97552.1, ECO:0000313|Proteomes:UP000054815}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ISS141 {ECO:0000313|EMBL:KRX97552.1};
Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
"Evolution of Trichinella species and genotypes.";
Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the DEAD box helicase family.
{ECO:0000256|RuleBase:RU000492}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:KRX97552.1}.
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EMBL; JYDU01000030; KRX97552.1; -; Genomic_DNA.
Proteomes; UP000054815; Unassembled WGS sequence.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
CDD; cd00079; HELICc; 1.
InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
Pfam; PF00270; DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:KRX97552.1}; Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000054815};
Helicase {ECO:0000256|RuleBase:RU000492, ECO:0000313|EMBL:KRX97552.1};
Hydrolase {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:KRX97552.1};
Nucleotide-binding {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:KRX97552.1};
Reference proteome {ECO:0000313|Proteomes:UP000054815};
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 459 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5006873174.
DOMAIN 44 215 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 261 425 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
COILED 402 436 {ECO:0000256|SAM:Coils}.
NON_TER 1 1 {ECO:0000313|EMBL:KRX97552.1}.
SEQUENCE 459 AA; 51590 MW; 047F9A483D41D654 CRC64;
LNGKNGTLFT ILIACFTKGV VPVLCEACKQ LNWTEATKVQ VEAIPLALQG RDVIGLAETG
SGKTAAFALP ILQALLEHPQ RLFALVLTPT RELAYQIAEQ FEALGACIGI KVAVIVGGVD
MVTQALCLAK KPHVIVATPG RLVDHLENTK GFNLRSLKYL VMDEADRILD MDFESEVNKI
LQVIPRERKT YLFSATMTKK VSKLQRASLH DPVKVEVSSK YQTVDKLQQH YIFIPQKFKV
SELHTNNFYS GNFVLFTEDC YLVYILNEMA GKSCIVFTST CANSLRTALL LRNLGFTAVP
LHGQMSQAKR LGALNKFKAK DRSILIATDV ASRGLDIPHV DLVINFDIPT HSKDYIHRVG
RTARAGRAGI SITFVTQYRI EYLLGKQLPL YKTEEPEVLS LLERVTEANR IAKMQVKELE
DKKRMNKKRN REAQNEDDDD GDTEDPTKNF RKRLKKKKK


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Kits Elisa; taq POLYMERASE

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Pathways :
WP1672: Mismatch repair
WP1678: Nucleotide excision repair
WP1493: Carbon assimilation C4 pathway
WP1581: Histidine metabolism
WP1619: Amino sugar and nucleotide sugar metabolism
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1673: Naphthalene and anthracene degradation
WP1676: Non-homologous end-joining
WP1689: Porphyrin and chlorophyll metabolism
WP1692: Protein export
WP1700: Selenoamino acid metabolism
WP1709: Thiamine metabolism
WP1714: Tyrosine metabolism
WP2344: vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) biosynthesis and salvage pathway
WP710: DNA damage response (only ATM dependent)

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[AGO2 EIF2C2] Protein argonaute-2 (Argonaute2) (hAgo2) (EC 3.1.26.n2) (Argonaute RISC catalytic component 2) (Eukaryotic translation initiation factor 2C 2) (eIF-2C 2) (eIF2C 2) (PAZ Piwi domain protein) (PPD) (Protein slicer)
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[Ago2 Eif2c2] Protein argonaute-2 (Argonaute2) (EC 3.1.26.n2) (Argonaute RISC catalytic component 2) (Eukaryotic translation initiation factor 2C 2) (eIF-2C 2) (eIF2C 2) (Golgi ER protein 95 kDa) (GERp95) (Protein slicer)
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Bibliography :