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Retinoic acid receptor RXR-beta (MHC class I regulatory element-binding protein H-2RIIBP) (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta)

 RXRB_MOUSE              Reviewed;         520 AA.
P28704; P33243;
01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
01-FEB-1996, sequence version 2.
26-FEB-2020, entry version 195.
RecName: Full=Retinoic acid receptor RXR-beta;
AltName: Full=MHC class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta;
Name=Rxrb; Synonyms=Nr2b2;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING, AND TISSUE
SPECIFICITY.
STRAIN=BALB/cJ; TISSUE=Liver;
PubMed=8194750; DOI=10.1016/0378-1119(94)90259-3;
Nagata T., Kanno Y., Ozato K., Taketo M.;
"The mouse Rxrb gene encoding RXR beta: genomic organization and two mRNA
isoforms generated by alternative splicing of transcripts initiated from
CpG island promoters.";
Gene 142:183-189(1994).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=129/SvJ;
Rowen L., Qin S., Madan A., Loretz C., James R., Dors M., Mix L., Hall J.,
Lasky S., Hood L.;
"Sequence of the mouse major histocomaptibility locus class II region.";
Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM LONG).
TISSUE=Limb;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project:
the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 73-520 (ISOFORM LONG), AND FUNCTION.
TISSUE=Embryo;
PubMed=1310259; DOI=10.1016/0092-8674(92)90478-u;
Leid M., Kastner P., Lyons R., Nakshatri H., Saunders M., Zacharewsi T.,
Chen J.Y., Staub A., Garnier J.-M., Mader S., Chambon P.;
"Purification, cloning, and RXR identity of the HeLa cell factor with which
RAR or TR heterodimerizes to bind target sequences efficiently.";
Cell 68:377-395(1992).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 75-520 (ISOFORM LONG).
TISSUE=Liver;
PubMed=2554307; DOI=10.1073/pnas.86.21.8289;
Hamada K., Gleason S.L., Levi B.-Z., Hirschfeld S., Appella E., Ozato K.;
"H-2RIIBP, a member of the nuclear hormone receptor superfamily that binds
to both the regulatory element of major histocompatibility class I genes
and the estrogen response element.";
Proc. Natl. Acad. Sci. U.S.A. 86:8289-8293(1989).
[6]
NUCLEOTIDE SEQUENCE (ISOFORM SHORT), FUNCTION, TISSUE SPECIFICITY, AND
DOMAIN.
TISSUE=Liver;
PubMed=1312497; DOI=10.1101/gad.6.3.329;
Mangelsdorf D.J., Borgmeyer U., Heyman R.A., Zhou J.Y., Ong E.S., Oro A.E.,
Kakizuka A., Evans R.M.;
"Characterization of three RXR genes that mediate the action of 9-cis
retinoic acid.";
Genes Dev. 6:329-344(1992).
[7]
INTERACTION WITH AKAP13.
PubMed=20139090; DOI=10.1074/jbc.m110.106856;
Mayers C.M., Wadell J., McLean K., Venere M., Malik M., Shibata T.,
Driggers P.H., Kino T., Guo X.C., Koide H., Gorivodsky M., Grinberg A.,
Mukhopadhyay M., Abu-Asab M., Westphal H., Segars J.H.;
"The Rho guanine nucleotide exchange factor AKAP13 (BRX) is essential for
cardiac development in mice.";
J. Biol. Chem. 285:12344-12354(2010).
-!- FUNCTION: Receptor for retinoic acid. Retinoic acid receptors bind as
heterodimers to their target response elements in response to their
ligands, all-trans or 9-cis retinoic acid, and regulate gene expression
in various biological processes. The RAR/RXR heterodimers bind to the
retinoic acid response elements (RARE). {ECO:0000269|PubMed:1310259,
ECO:0000269|PubMed:1312497}.
-!- SUBUNIT: Homodimer (in vitro). Heterodimer with other retinoic acid
receptor family members. Binds DNA preferentially as a RAR/RXR
heterodimer. Interacts with NR1H3 (By similarity). Interacts with
AKAP13 (PubMed:20139090). {ECO:0000250|UniProtKB:P28702,
ECO:0000269|PubMed:20139090}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:P28702}. Cytoplasm
{ECO:0000250|UniProtKB:P28702}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Comment=Additional isoforms seem to exist.;
Name=Long;
IsoId=P28704-1; Sequence=Displayed;
Name=Short;
IsoId=P28704-2; Sequence=VSP_003678;
-!- TISSUE SPECIFICITY: In all tissues tested, including brain, thymus,
spleen and liver. {ECO:0000269|PubMed:1312497,
ECO:0000269|PubMed:8194750}.
-!- DOMAIN: Composed of three domains: a modulating N-terminal domain, a
DNA-binding domain and a C-terminal ligand-binding domain.
{ECO:0000305|PubMed:1312497}.
-!- SIMILARITY: Belongs to the nuclear hormone receptor family. NR2
subfamily. {ECO:0000305}.
---------------------------------------------------------------------------
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EMBL; D21831; BAA04858.1; -; Genomic_DNA.
EMBL; D21831; BAA04859.1; -; Genomic_DNA.
EMBL; AF100956; AAC69904.1; -; Genomic_DNA.
EMBL; BC049773; AAH49773.1; -; mRNA.
EMBL; M84818; AAA40081.2; -; mRNA.
EMBL; M26804; AAA37772.1; -; mRNA.
EMBL; X66224; CAA46963.1; -; mRNA.
CCDS; CCDS57068.1; -. [P28704-2]
CCDS; CCDS89073.1; -. [P28704-1]
PIR; A34418; A34418.
PIR; D41727; D41727.
PIR; I84718; I84718.
PIR; S26669; S26669.
RefSeq; NP_001192145.1; NM_001205216.1. [P28704-2]
RefSeq; NP_035436.1; NM_011306.4. [P28704-1]
SMR; P28704; -.
BioGrid; 203039; 2.
ComplexPortal; CPX-706; RXRbeta-LXRbeta nuclear hormone receptor complex.
ComplexPortal; CPX-717; RXRbeta-LXRalpha nuclear hormone receptor complex.
ComplexPortal; CPX-872; RXRbeta-VDR nuclear hormone receptor complex.
IntAct; P28704; 1.
STRING; 10090.ENSMUSP00000036585; -.
BindingDB; P28704; -.
ChEMBL; CHEMBL4047; -.
DrugCentral; P28704; -.
GuidetoPHARMACOLOGY; 611; -.
iPTMnet; P28704; -.
PhosphoSitePlus; P28704; -.
MaxQB; P28704; -.
PaxDb; P28704; -.
PeptideAtlas; P28704; -.
PRIDE; P28704; -.
Ensembl; ENSMUST00000116612; ENSMUSP00000112311; ENSMUSG00000039656. [P28704-2]
Ensembl; ENSMUST00000174299; ENSMUSP00000133775; ENSMUSG00000039656. [P28704-1]
GeneID; 20182; -.
KEGG; mmu:20182; -.
UCSC; uc008cax.2; mouse. [P28704-1]
CTD; 6257; -.
MGI; MGI:98215; Rxrb.
eggNOG; KOG3575; Eukaryota.
eggNOG; ENOG410XRZC; LUCA.
GeneTree; ENSGT00940000159208; -.
HOGENOM; CLU_007368_5_4_1; -.
InParanoid; P28704; -.
KO; K08525; -.
OMA; FXVQEER; -.
OrthoDB; 912470at2759; -.
PhylomeDB; P28704; -.
Reactome; R-MMU-383280; Nuclear Receptor transcription pathway.
Reactome; R-MMU-5362517; Signaling by Retinoic Acid.
Reactome; R-MMU-9029569; NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux.
Reactome; R-MMU-9623433; NR1H2 & NR1H3 regulate gene expression to control bile acid homeostasis.
ChiTaRS; Rxrb; mouse.
PRO; PR:P28704; -.
Proteomes; UP000000589; Chromosome 17.
RNAct; P28704; protein.
Bgee; ENSMUSG00000039656; Expressed in embryo and 305 other tissues.
ExpressionAtlas; P28704; baseline and differential.
Genevisible; P28704; MM.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005654; C:nucleoplasm; ISO:MGI.
GO; GO:0005634; C:nucleus; ISO:MGI.
GO; GO:0090575; C:RNA polymerase II transcription factor complex; IBA:GO_Central.
GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; ISO:MGI.
GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
GO; GO:0004879; F:nuclear receptor activity; IDA:MGI.
GO; GO:0044877; F:protein-containing complex binding; ISO:MGI.
GO; GO:0042974; F:retinoic acid receptor binding; ISO:MGI.
GO; GO:0044323; F:retinoic acid-responsive element binding; IBA:GO_Central.
GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IDA:MGI.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:MGI.
GO; GO:0043565; F:sequence-specific DNA binding; IGI:MGI.
GO; GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
GO; GO:0046966; F:thyroid hormone receptor binding; ISO:MGI.
GO; GO:0030375; F:thyroid hormone receptor coactivator activity; ISO:MGI.
GO; GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.
GO; GO:0042809; F:vitamin D receptor binding; ISO:MGI.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0048856; P:anatomical structure development; IBA:GO_Central.
GO; GO:0060038; P:cardiac muscle cell proliferation; IGI:MGI.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0071300; P:cellular response to retinoic acid; IDA:UniProtKB.
GO; GO:0001701; P:in utero embryonic development; IGI:MGI.
GO; GO:0001893; P:maternal placenta development; IGI:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IGI:MGI.
GO; GO:0031641; P:regulation of myelination; ISO:MGI.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0032526; P:response to retinoic acid; IBA:GO_Central.
GO; GO:0048384; P:retinoic acid receptor signaling pathway; IDA:MGI.
GO; GO:0055012; P:ventricular cardiac muscle cell differentiation; IMP:MGI.
Gene3D; 1.10.565.10; -; 1.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR035500; NHR-like_dom_sf.
InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
InterPro; IPR001723; Nuclear_hrmn_rcpt.
InterPro; IPR000003; Retinoid-X_rcpt/HNF4.
InterPro; IPR001628; Znf_hrmn_rcpt.
InterPro; IPR013088; Znf_NHR/GATA.
Pfam; PF00104; Hormone_recep; 1.
Pfam; PF00105; zf-C4; 1.
PRINTS; PR00545; RETINOIDXR.
PRINTS; PR00398; STRDHORMONER.
PRINTS; PR00047; STROIDFINGER.
SMART; SM00430; HOLI; 1.
SMART; SM00399; ZnF_C4; 1.
SUPFAM; SSF48508; SSF48508; 1.
PROSITE; PS51843; NR_LBD; 1.
PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
1: Evidence at protein level;
Alternative splicing; Cytoplasm; DNA-binding; Metal-binding; Methylation;
Nucleus; Receptor; Reference proteome; Transcription;
Transcription regulation; Zinc; Zinc-finger.
CHAIN 1..520
/note="Retinoic acid receptor RXR-beta"
/id="PRO_0000053573"
DOMAIN 283..516
/note="NR LBD"
/evidence="ECO:0000255|PROSITE-ProRule:PRU01189"
DNA_BIND 192..257
/note="Nuclear receptor"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
ZN_FING 192..212
/note="NR C4-type"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
ZN_FING 228..252
/note="NR C4-type"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00407"
REGION 1..191
/note="Modulating"
/evidence="ECO:0000250"
REGION 258..382
/note="Hinge"
MOD_RES 25
/note="Omega-N-methylarginine"
/evidence="ECO:0000250|UniProtKB:P28702"
VAR_SEQ 1..110
/note="Missing (in isoform Short)"
/evidence="ECO:0000305"
/id="VSP_003678"
CONFLICT 73..75
/note="SGR -> MGP (in Ref. 4; AAA40081)"
/evidence="ECO:0000305"
CONFLICT 75..77
/note="RDS -> EFP (in Ref. 5; AAA37772)"
/evidence="ECO:0000305"
CONFLICT 433
/note="L -> M (in Ref. 4; AAA40081)"
/evidence="ECO:0000305"
SEQUENCE 520 AA; 55866 MW; 71FAEAEC0D2DB505 CRC64;
MSWATRPPFL PPRHAAGQCG PVGVRKEMHC GVASRWRRRR PWLDPAAAAA AAGEQQALEP
EPGEAGRDGM GDSGRDSRSP DSSSPNPLSQ GIRPSSPPGP PLTPSAPPPP MPPPPLGSPF
PVISSSMGSP GLPPPAPPGF SGPVSSPQIN STVSLPGGGS GPPEDVKPPV LGVRGLHCPP
PPGGPGAGKR LCAICGDRSS GKHYGVYSCE GCKGFFKRTI RKDLTYSCRD NKDCTVDKRQ
RNRCQYCRYQ KCLATGMKRE AVQEERQRGK DKDGDGDGAG GAPEEMPVDR ILEAELAVEQ
KSDQGVEGPG ATGGGGSSPN DPVTNICQAA DKQLFTLVEW AKRIPHFSSL PLDDQVILLR
AGWNELLIAS FSHRSIDVRD GILLATGLHV HRNSAHSAGV GAIFDRVLTE LVSKMRDMRM
DKTELGCLRA IILFNPDAKG LSNPGEVEIL REKVYASLET YCKQKYPEQQ GRFAKLLLRL
PALRSIGLKC LEHLFFFKLI GDTPIDTFLM EMLEAPHQLA


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WP2328: Allograft rejection
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Related Genes :
[Rxrb Nr2b2] Retinoic acid receptor RXR-beta (MHC class I regulatory element-binding protein H-2RIIBP) (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta)
[rxrbb nr2b2b rxrd] Retinoic acid receptor RXR-beta-B (Nuclear receptor subfamily 2 group B member 2-B) (Retinoic acid receptor RXR-delta) (Retinoid X receptor beta-B) (Retinoid X receptor delta)
[Rxrb Nr2b2 Rcor-1] Retinoic acid receptor RXR-beta (Nuclear receptor coregulator 1) (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta) (Fragment)
[RXRB NR2B2] Retinoic acid receptor RXR-beta (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta)
[rxrba nr2b2a rxrb rxre] Retinoic acid receptor RXR-beta-A (Nuclear receptor subfamily 2 group B member 2-A) (Retinoid X receptor beta-A)
[rxrga nr2b1 nr2b3a rxr rxra rxrg] Retinoic acid receptor RXR-gamma-A (Nuclear receptor subfamily 2 group B member 3-A) (Retinoic acid receptor RXR-alpha) (Retinoid X receptor alpha) (Retinoid X receptor gamma-A)
[RXRA NR2B1] Retinoic acid receptor RXR-alpha (Nuclear receptor subfamily 2 group B member 1) (Retinoid X receptor alpha)
[Rxra Nr2b1] Retinoic acid receptor RXR-alpha (Nuclear receptor subfamily 2 group B member 1) (Retinoid X receptor alpha)
[Rxra Nr2b1] Retinoic acid receptor RXR-alpha (Nuclear receptor subfamily 2 group B member 1) (Retinoid X receptor alpha)
[RXRG NR2B3] Retinoic acid receptor RXR-gamma (Nuclear receptor subfamily 2 group B member 3) (Retinoid X receptor gamma)
[Rxrg Nr2b3] Retinoic acid receptor RXR-gamma (Nuclear receptor subfamily 2 group B member 3) (Retinoid X receptor gamma)
[NR1H4 BAR FXR HRR1 RIP14] Bile acid receptor (Farnesoid X-activated receptor) (Farnesol receptor HRR-1) (Nuclear receptor subfamily 1 group H member 4) (Retinoid X receptor-interacting protein 14) (RXR-interacting protein 14)
[Rxrg Nr2b3] Retinoic acid receptor RXR-gamma (Nuclear receptor subfamily 2 group B member 3) (Retinoid X receptor gamma)
[RXRG NR2B3] Retinoic acid receptor RXR-gamma (Nuclear receptor subfamily 2 group B member 3) (Retinoid X receptor gamma)
[rxrab nr2b1b rxra rxrg] Retinoic acid receptor RXR-alpha-B (Nuclear receptor subfamily 2 group B member 1-B) (Retinoid X receptor alpha-B)
[RARB HAP NR1B2] Retinoic acid receptor beta (RAR-beta) (HBV-activated protein) (Nuclear receptor subfamily 1 group B member 2) (RAR-epsilon)
[Nr1h4 Bar Fxr Rip14] Bile acid receptor (Farnesoid X-activated receptor) (Farnesol receptor HRR-1) (Nuclear receptor subfamily 1 group H member 4) (Retinoid X receptor-interacting protein 14) (RXR-interacting protein 14)
[Rarb Nr1b2] Retinoic acid receptor beta (RAR-beta) (Nuclear receptor subfamily 1 group B member 2)
[Nr1h4 Bar Fxr Rip14] Bile acid receptor (Farnesoid X-activated receptor) (Farnesol receptor HRR-1) (Nuclear receptor subfamily 1 group H member 4) (Retinoid X receptor-interacting protein 14) (RXR-interacting protein 14)
[Nr1h2 Lxrb] Oxysterols receptor LXR-beta (Liver X receptor beta) (Nuclear receptor subfamily 1 group H member 2) (Orphan nuclear receptor OR-1) (Ubiquitously-expressed nuclear receptor) (UR)
[RXRB NR2B2] Retinoic acid receptor RXR-beta (Nuclear receptor subfamily 2 group B member 2) (Retinoid X receptor beta)
[rxraa nr2b1a] Retinoic acid receptor RXR-alpha-A (Nuclear receptor subfamily 2 group B member 1-A) (RXRalpha-B) (Retinoid X receptor alpha-A)
[RARB NR1B2] Retinoic acid receptor beta (RAR-beta) (Nuclear receptor subfamily 1 group B member 2)
[RARA NR1B1] Retinoic acid receptor alpha (RAR-alpha) (Nuclear receptor subfamily 1 group B member 1)
[Rarg Nr1b3] Retinoic acid receptor gamma (RAR-gamma) (Nuclear receptor subfamily 1 group B member 3)
[RARG NR1B3] Retinoic acid receptor gamma (RAR-gamma) (Nuclear receptor subfamily 1 group B member 3)
[Nr2c1 Tr2 Tr2-11] Nuclear receptor subfamily 2 group C member 1 (Orphan nuclear receptor TR2) (Testicular receptor 2) (mTR2)
[rxra nr2b1] Retinoic acid receptor RXR-alpha (Nuclear receptor subfamily 2 group B member 1) (Retinoid X receptor alpha)
[rarga nr1b3a rarg rarg2 si:dkey-148f24.2] Retinoic acid receptor gamma-A (RAR-gamma-A) (zRAR gamma) (Nuclear receptor subfamily 1 group B member 3-A) (RAR-gamma-2)
[RORB NR1F2 RZRB] Nuclear receptor ROR-beta (Nuclear receptor RZR-beta) (Nuclear receptor subfamily 1 group F member 2) (Retinoid-related orphan receptor-beta)

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