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Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)

 A0A1Y1R5Y8_9GAMM        Unreviewed;       313 AA.
A0A1Y1R5Y8;
30-AUG-2017, integrated into UniProtKB/TrEMBL.
30-AUG-2017, sequence version 1.
03-JUL-2019, entry version 10.
RecName: Full=Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583};
Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};
EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};
AltName: Full=5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583};
AltName: Full=Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583};
AltName: Full=Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583};
Short=P-Rib-PP synthase {ECO:0000256|HAMAP-Rule:MF_00583};
Short=PRPP synthase {ECO:0000256|HAMAP-Rule:MF_00583};
Short=PRPPase {ECO:0000256|HAMAP-Rule:MF_00583};
Name=prs {ECO:0000256|HAMAP-Rule:MF_00583};
ORFNames=B0D91_05750 {ECO:0000313|EMBL:OQX37901.1};
Oceanospirillales bacterium LUC14_002_19_P2.
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
unclassified Oceanospirillales.
NCBI_TaxID=1940822 {ECO:0000313|EMBL:OQX37901.1, ECO:0000313|Proteomes:UP000192421};
[1] {ECO:0000313|EMBL:OQX37901.1, ECO:0000313|Proteomes:UP000192421}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=LUC14_002_19_P2 {ECO:0000313|EMBL:OQX37901.1};
Lim S.J., Davis B.G., Gill D.E., Engel A.S., Anderson L.C.,
Campbell B.J.;
"Novel co-symbiosis in the unique lucinid bivalve Phacoides
pectinatus.";
Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Involved in the biosynthesis of the central metabolite
phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of
pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate
(Rib-5-P). {ECO:0000256|HAMAP-Rule:MF_00583}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + D-ribose 5-phosphate = 5-phospho-alpha-D-ribose 1-
diphosphate + AMP + H(+); Xref=Rhea:RHEA:15609,
ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:58017,
ChEBI:CHEBI:78346, ChEBI:CHEBI:456215; EC=2.7.6.1;
Evidence={ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS01115190};
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000256|HAMAP-Rule:MF_00583};
Note=Binds 2 Mg(2+) ions per subunit. {ECO:0000256|HAMAP-
Rule:MF_00583};
-!- PATHWAY: Metabolic intermediate biosynthesis; 5-phospho-alpha-D-
ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-
diphosphate from D-ribose 5-phosphate (route I): step 1/1.
{ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000256|SAAS:SAAS00956751}.
-!- SUBUNIT: Homohexamer. {ECO:0000256|HAMAP-Rule:MF_00583}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00583}.
-!- SIMILARITY: Belongs to the ribose-phosphate pyrophosphokinase
family. Class I subfamily. {ECO:0000256|HAMAP-Rule:MF_00583}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:OQX37901.1}.
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EMBL; MUIA01000165; OQX37901.1; -; Genomic_DNA.
UniPathway; UPA00087; UER00172.
Proteomes; UP000192421; Unassembled WGS sequence.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW.
GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004749; F:ribose phosphate diphosphokinase activity; IEA:UniProtKB-UniRule.
GO; GO:0006015; P:5-phosphoribose 1-diphosphate biosynthetic process; IEA:UniProtKB-UniPathway.
GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro.
GO; GO:0009165; P:nucleotide biosynthetic process; IEA:UniProtKB-KW.
GO; GO:0009156; P:ribonucleoside monophosphate biosynthetic process; IEA:UniProtKB-UniRule.
CDD; cd06223; PRTases_typeI; 1.
HAMAP; MF_00583_B; RibP_PPkinase_B; 1.
InterPro; IPR000842; PRib_PP_synth_CS.
InterPro; IPR029099; Pribosyltran_N.
InterPro; IPR000836; PRibTrfase_dom.
InterPro; IPR029057; PRTase-like.
InterPro; IPR005946; Rib-P_diPkinase.
InterPro; IPR037515; Rib-P_diPkinase_bac.
PANTHER; PTHR10210; PTHR10210; 1.
Pfam; PF14572; Pribosyl_synth; 1.
Pfam; PF13793; Pribosyltran_N; 1.
SUPFAM; SSF53271; SSF53271; 1.
TIGRFAMs; TIGR01251; ribP_PPkin; 1.
PROSITE; PS00114; PRPP_SYNTHASE; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956731};
Complete proteome {ECO:0000313|Proteomes:UP000192421};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00583};
Kinase {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956744, ECO:0000313|EMBL:OQX37901.1};
Magnesium {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956743};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956748};
Nucleotide biosynthesis {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956760};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956731};
Reference proteome {ECO:0000313|Proteomes:UP000192421};
Transferase {ECO:0000256|HAMAP-Rule:MF_00583,
ECO:0000256|SAAS:SAAS00956744, ECO:0000313|EMBL:OQX37901.1}.
DOMAIN 4 121 Pribosyltran_N.
{ECO:0000259|Pfam:PF13793}.
NP_BIND 37 39 ATP. {ECO:0000256|HAMAP-Rule:MF_00583}.
NP_BIND 96 97 ATP. {ECO:0000256|HAMAP-Rule:MF_00583}.
REGION 223 227 Ribose-5-phosphate binding.
{ECO:0000256|HAMAP-Rule:MF_00583}.
ACT_SITE 193 193 {ECO:0000256|HAMAP-Rule:MF_00583}.
METAL 131 131 Magnesium. {ECO:0000256|HAMAP-
Rule:MF_00583}.
METAL 170 170 Magnesium. {ECO:0000256|HAMAP-
Rule:MF_00583}.
BINDING 195 195 Ribose-5-phosphate. {ECO:0000256|HAMAP-
Rule:MF_00583}.
BINDING 219 219 Ribose-5-phosphate. {ECO:0000256|HAMAP-
Rule:MF_00583}.
SEQUENCE 313 AA; 34144 MW; 91FCC58987802987 CRC64;
MSKMMVFAGN SNPELVQKVV DHLHIPLGKA SVGRFSDGEV SVEIQENVRG KDVFIIQSTC
APTNDNLMEL LVMADAMRRS SAARVTAVIP YFGYARQDRR PRSTRVAISA KVVADMIASV
GVDRVLTVDL HADQIQGFFD IPVDNIYGSP VLLDDIERRN LDNMVIVSPD HGGVVRARAV
AKRLNAELAI IDKRRPEANK AEVMNIIGDV NGRTCILVDD MVDTAGTLCQ ATIALKEKGA
KQVFAYATHP VLSGRALENV ANSELDELVV TNTIPLTPAA RAVDRIRQLD MSPLVAESVR
RISNAESISA MFR


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[prs BJD20_09025 CW311_18640] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
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[prs MSMEI_5278] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
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[prsA prs HPHPH24_1049] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPCPY1962_1150] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPCPY6311_0771] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPHPA4_0960] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPCPY3281_0904] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPHPH4_0736] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prsA prs HPCPY1124_0906] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prs HPHPP15_1083] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prs HPHPP41_0798] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prs HPHPP30_1366] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)
[prs HPHPP11_1085] Ribose-phosphate pyrophosphokinase (RPPK) (EC 2.7.6.1) (5-phospho-D-ribosyl alpha-1-diphosphate) (Phosphoribosyl diphosphate synthase) (Phosphoribosyl pyrophosphate synthase) (P-Rib-PP synthase) (PRPP synthase) (PRPPase)

Bibliography :