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Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) (Fragment)

 B5LBW7_RUBAL            Unreviewed;       202 AA.
B5LBW7;
14-OCT-2008, integrated into UniProtKB/TrEMBL.
14-OCT-2008, sequence version 1.
13-FEB-2019, entry version 43.
RecName: Full=Ribulose bisphosphate carboxylase large chain {ECO:0000256|RuleBase:RU000302};
EC=4.1.1.39 {ECO:0000256|RuleBase:RU000302};
Flags: Fragment;
Name=rbcL {ECO:0000313|EMBL:ACD46449.1};
Rubus allegheniensis (Allegheny blackberry).
Plastid; Chloroplast {ECO:0000313|EMBL:ACD46449.1}.
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae;
Rosoideae unplaced; Rubus.
NCBI_TaxID=75062 {ECO:0000313|EMBL:ACD46449.1};
[1] {ECO:0000313|EMBL:ACD46449.1}
NUCLEOTIDE SEQUENCE.
PubMed=18665273; DOI=10.1371/journal.pone.0002802;
Fazekas A.J., Burgess K.S., Kesanakurti P.R., Graham S.W.,
Newmaster S.G., Husband B.C., Percy D.M., Hajibabaei M., Barrett S.C.;
"Multiple multilocus DNA barcodes from the plastid genome discriminate
plant species equally well.";
PLoS ONE 3:E2802-E2802(2008).
-!- CATALYTIC ACTIVITY:
Reaction=2 3-phospho-D-glycerate + 2 H(+) = CO2 + D-ribulose 1,5-
bisphosphate + H2O; Xref=Rhea:RHEA:23124, ChEBI:CHEBI:15377,
ChEBI:CHEBI:15378, ChEBI:CHEBI:16526, ChEBI:CHEBI:57870,
ChEBI:CHEBI:58272; EC=4.1.1.39;
Evidence={ECO:0000256|RuleBase:RU000302};
-!- CATALYTIC ACTIVITY:
Reaction=D-ribulose 1,5-bisphosphate + O2 = 2-phosphoglycolate +
3-phospho-D-glycerate + 2 H(+); Xref=Rhea:RHEA:36631,
ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:57870,
ChEBI:CHEBI:58033, ChEBI:CHEBI:58272;
Evidence={ECO:0000256|RuleBase:RU000302};
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000256|RuleBase:RU000302};
Note=Binds 1 Mg(2+) ion per subunit.
{ECO:0000256|RuleBase:RU000302};
-!- SUBUNIT: Heterohexadecamer of 8 large chains and 8 small chains.
{ECO:0000256|RuleBase:RU000302}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast
{ECO:0000256|RuleBase:RU000302}.
-!- SIMILARITY: Belongs to the RuBisCO large chain family.
{ECO:0000256|RuleBase:RU000302}.
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EMBL; EU676983; ACD46449.1; -; Genomic_DNA.
EMBL; EU676984; ACD46450.1; -; Genomic_DNA.
EMBL; EU676985; ACD46451.1; -; Genomic_DNA.
GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO; GO:0000287; F:magnesium ion binding; IEA:InterPro.
GO; GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW.
GO; GO:0016984; F:ribulose-bisphosphate carboxylase activity; IEA:UniProtKB-EC.
GO; GO:0009853; P:photorespiration; IEA:UniProtKB-KW.
GO; GO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-KW.
Gene3D; 3.20.20.110; -; 1.
Gene3D; 3.30.70.150; -; 1.
InterPro; IPR033966; RuBisCO.
InterPro; IPR020878; RuBisCo_large_chain_AS.
InterPro; IPR000685; RuBisCO_lsu_C.
InterPro; IPR036376; RuBisCO_lsu_C_sf.
InterPro; IPR017443; RuBisCO_lsu_fd_N.
InterPro; IPR036422; RuBisCO_lsu_N_sf.
PANTHER; PTHR42704; PTHR42704; 1.
Pfam; PF00016; RuBisCO_large; 1.
Pfam; PF02788; RuBisCO_large_N; 1.
SUPFAM; SSF51649; SSF51649; 1.
SUPFAM; SSF54966; SSF54966; 1.
PROSITE; PS00157; RUBISCO_LARGE; 1.
3: Inferred from homology;
Calvin cycle {ECO:0000256|RuleBase:RU000302};
Carbon dioxide fixation {ECO:0000256|RuleBase:RU000302};
Chloroplast {ECO:0000256|RuleBase:RU000302,
ECO:0000313|EMBL:ACD46449.1}; Lyase {ECO:0000256|RuleBase:RU000302};
Magnesium {ECO:0000256|RuleBase:RU000302};
Metal-binding {ECO:0000256|RuleBase:RU000302};
Monooxygenase {ECO:0000256|RuleBase:RU000302};
Oxidoreductase {ECO:0000256|RuleBase:RU000302};
Photorespiration {ECO:0000256|RuleBase:RU000302};
Photosynthesis {ECO:0000256|RuleBase:RU000302};
Plastid {ECO:0000256|RuleBase:RU000302, ECO:0000313|EMBL:ACD46449.1}.
DOMAIN 15 135 RuBisCO_large_N.
{ECO:0000259|Pfam:PF02788}.
DOMAIN 145 202 RuBisCO_large.
{ECO:0000259|Pfam:PF00016}.
NON_TER 1 1 {ECO:0000313|EMBL:ACD46449.1}.
NON_TER 202 202 {ECO:0000313|EMBL:ACD46449.1}.
SEQUENCE 202 AA; 22333 MW; BED0153EB36E3CF6 CRC64;
SVGFKAGVKD YKLTYYTPDY ETKDTDILAA FRVTPQPGVP PEEAGAAVAA ESSTGTWTTV
WTDGLTSLDR YKGRCYHIEP VAGEESQFIA YVAYPLDLFE EGSVTNMFTS IVGNVFGFKA
LRALRLEDLR IPPAYVKTFQ GPPHGIQVER DKLNKYGRPL LGCTIKPKLG LSAKNYGRAV
YECLRGGLDF TKDDENVNSQ PF


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Kits Elisa; taq POLYMERASE

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Pathways :
WP1493: Carbon assimilation C4 pathway
WP1002: Electron Transport Chain
WP111: Electron Transport Chain
WP1119: Electron Transport Chain
WP1339: Electron Transport Chain
WP1502: Mitochondrial biogenesis
WP1614: 1- and 2-Methylnaphthalene degradation
WP1626: Benzoate degradation via CoA ligation
WP1633: Bisphenol A degradation
WP1647: Fatty acid biosynthesis
WP1654: gamma-Hexachlorocyclohexane degradation
WP1665: Limonene and pinene degradation
WP1671: Methane metabolism
WP1673: Naphthalene and anthracene degradation
WP1708: Terpenoid backbone biosynthesis
WP1711: Trinitrotoluene degradation
WP1996: Linoleate Biosynthesis
WP2347: vitamin B5 (pantothenate) and CoA biosynthesis Pathway
WP2434: very-long-chain-fatty-acid-biosynthesis
WP253: Glycolysis
WP295: Electron Transport Chain
WP296: TCA Cycle - biocyc
WP542: Electron Transport Chain
WP59: Electron Transport Chain
WP772: Electron Transport Chain

Related Genes :
[rbcL LOC_Osp1g00420 Nip064] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[RBCS RBCS-C Os12g0274700 LOC_Os12g17600 OsJ_016909 OsJ_17688] Ribulose bisphosphate carboxylase small chain, chloroplastic (Ribulose bisphosphate carboxylase small chain C) (RuBisCO small subunit) (RuBisCO small subunit C) (EC 4.1.1.39)
[TK0185] Ribose 1,5-bisphosphate isomerase (R15P isomerase) (R15Pi) (EC 5.3.1.29) (Ribulose 1,5-bisphosphate synthase) (RuBP synthase)
[cbbL1 cbbL-1 cbbLS-1] Ribulose bisphosphate carboxylase large chain 1 (RuBisCO large subunit 1) (EC 4.1.1.39)
[cbbM cbbL2 Tbd_2638] Ribulose bisphosphate carboxylase (RuBisCO) (EC 4.1.1.39)
[cbbL2 cbbL-2 cbbLS-2] Ribulose bisphosphate carboxylase large chain 2 (RuBisCO large subunit 2) (EC 4.1.1.39)
[Ald CG6058] Fructose-bisphosphate aldolase (EC 4.1.2.13)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[cbbL Hneap_0922] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[C3 CPAMD1] Complement C3 (C3 and PZP-like alpha-2-macroglobulin domain-containing protein 1) [Cleaved into: Complement C3 beta chain; C3-beta-c (C3bc); Complement C3 alpha chain; C3a anaphylatoxin; Acylation stimulating protein (ASP) (C3adesArg); Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[agaY agaY_1 agaY_2 kbaY kbaY_1 kbaY_2 A6581_06135 A6592_14490 A8C65_02445 A8G17_24215 A9819_18030 A9R57_12875 AC789_1c35070 ACN002_3231 ACN81_18735 ACU57_14720 ACU90_11840 AKG99_18810 AM270_10360 AM446_04575 AM464_08310 AMK83_06615 AML07_27945 AML35_14160 APT94_22945 APU18_16660 APZ14_04020 ARC77_12125 AU473_06025 AUQ13_02800 AUS26_18535 AW059_15450 AZZ83_001415 B1K96_05960 B7C53_19450 BB545_10055 BEN53_19445 BHF46_07040 BHS81_18925 BIZ41_14335 BJJ90_03045 BK248_21775 BK292_10495 BK334_09815 BK383_15710 BK400_20325 BMT49_25850 BMT53_18450 BN17_30821 BTQ04_16760 BTQ06_20745 BVL39_10420 BW690_01005 BWP17_07060 BXT93_18380 BZL31_25275 BZL69_07435 C2U48_17840 C3K24_11445 C4J69_18785 C4K41_03525 C5715_12280 C5N07_16465 C5P01_19110 C5P43_02160 C6669_12295 C6986_20200 C6B13_15150 C7235_03500 C7B02_08945 C7B06_16525 C7B07_10875 C7B08_03310 C9E25_21030 CA593_10600 CG691_12975 CG692_22965 CG705_12120 CG706_23220 COD30_05970 COD46_22025 CR538_03350 CR539_20970 CRD98_04990 CRE06_06550 CRM83_23775 CSB64_06340 CT143_11135 CT146_02800 CVH05_07665 CWS33_08100 CXB56_06685 D0X26_08835 D1900_24065 D2183_08305 D2F89_23160 D3I61_18805 DIV22_09280 DIV25_06765 DL545_03915 DL800_22990 DNQ41_21475 DNR41_10930 DQE83_16800 DTL43_04020 DTL84_11155 DTL90_07295 DTM27_04405 DTM45_14255 EC1094V2_507 EC3234A_53c00160 EC95NR1_02516 ECONIH1_18600 ECs4017 EL75_0549 EL79_0572 EL80_0564 ERS085365_00596 ERS085366_00607 ERS085374_01873 ERS085379_00428 ERS085383_00753 ERS085386_00541 ERS085404_02243 ERS085406_03651 ERS085416_00299 ERS139211_00539 ERS150873_01748 ERS150876_00972 FORC28_0668 HMPREF3040_01995 HW43_20655 JD73_01650 MS6198_36220 MS8345_03490 NCTC10082_03001 NCTC10764_04039 NCTC10767_01694 NCTC10865_00851 NCTC11022_03300 NCTC11341_01695 NCTC12950_00651 NCTC13125_03918 NCTC13148_03216 NCTC13462_04280 NCTC13846_00667 NCTC7152_00616 NCTC8009_01738 NCTC8622_00268 NCTC8960_03245 NCTC8985_05190 NCTC9036_00713 NCTC9037_00830 NCTC9045_00750 NCTC9050_03774 NCTC9055_02547 NCTC9062_02519 NCTC9111_01031 NCTC9117_00956 NCTC9119_00687 NCTC9434_00595 NCTC9701_00743 NCTC9703_05134 NCTC9706_02907 NCTC9969_00822 PU06_20125 RG28_20800 RK56_014885 RX35_04224 SAMEA3472033_00859 SAMEA3472044_03367 SAMEA3472047_01838 SAMEA3472055_00433 SAMEA3472056_03039 SAMEA3472067_02761 SAMEA3472070_01205 SAMEA3472080_00912 SAMEA3472108_00133 SAMEA3472110_01572 SAMEA3472112_01556 SAMEA3472114_00516 SAMEA3472147_03318 SAMEA3484427_00641 SAMEA3484429_00701 SAMEA3484433_01239 SAMEA3484434_03283 SAMEA3485101_01677 SAMEA3752372_01750 SAMEA3752557_01908 SAMEA3752559_03865 SAMEA3753064_02903 SAMEA3753097_03267 SAMEA3753106_03728 SAMEA3753290_00181 SAMEA3753300_02165 SAMEA3753391_02230 SAMEA3753397_00141 SK85_03447 UC41_11540 UN86_15655 WM48_17485 WQ89_06915 WR15_24715 YDC107_1814] D-tagatose-1,6-bisphosphate aldolase subunit KbaY (TBPA) (TagBP aldolase) (EC 4.1.2.40) (D-tagatose-bisphosphate aldolase class II) (Ketose 1,6-bisphosphate aldolase class II) (Tagatose-bisphosphate aldolase)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[C3] Complement C3 [Cleaved into: Complement C3 beta chain; C3-beta-c (C3bc) (Neutrophil chemotactic factor-2) (ENCF-2); Complement C3 alpha chain; C3a anaphylatoxin (Neutrophil chemotactic factor-1) (ENCF-1); Acylation stimulating protein (ASP) (C3adesArg); Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[rbcL] Ribulose 1,5-bisphosphate carboxylase, chloroplastic (EC 4.1.1.39) (Fragment)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[rbcL cbbL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[C3] Complement C3 [Cleaved into: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; C3-beta-c (C3bc); Acylation stimulating protein (ASP) (C3adesArg); Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[rbcL cbbL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[C3] Complement C3 (HSE-MSF) [Cleaved into: Complement C3 beta chain; C3-beta-c (C3bc); Complement C3 alpha chain; C3a anaphylatoxin; Acylation stimulating protein (ASP) (C3adesArg); Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[rbcL] Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) (EC 4.1.1.39)
[fbp TK2164] Fructose-1,6-bisphosphate aldolase/phosphatase (FBP A/P) (FBP aldolase/phosphatase) (EC 3.1.3.11) (EC 4.1.2.13) (Fructose-1,6-bisphosphatase) (FBPase)
[aro-1 aro-2 aro-4 aro-5 aro-9 B14H13.20 NCU016321] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]
[rbcL DU34_02975 DU35_02985 DU36_03580 DU37_19230 DU38_04320 DU39_02630 DU41_20005 DU42_19595 DU46_03895 DU47_05790 DU49_16315 DU51_06020 DU57_06040 DU59_02990 DU60_04980 DU61_01535 DU62_03875 DU71_09960 DU72_07855 DU80_06230] Ribulose bisphosphate carboxylase (RuBisCO) (EC 4.1.1.39)
[C3] Complement C3 [Cleaved into: Complement C3 beta chain; C3-beta-c (C3bc); Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[C3] Complement C3 [Cleaved into: Complement C3 beta chain; C3-beta-c (C3bc); Complement C3 alpha chain; C3a anaphylatoxin; Acylation stimulating protein (ASP) (C3adesArg); Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2]
[F2] Prothrombin (EC 3.4.21.5) (Coagulation factor II) [Cleaved into: Activation peptide fragment 1; Activation peptide fragment 2; Thrombin light chain; Thrombin heavy chain]

Bibliography :
[26084890] Diversity and distribution of autotrophic microbial community along environmental gradients in grassland soils on the Tibetan Plateau.
[24203863] 20 years since the introduction of DNA barcoding: from theory to application.
[22159889] Long-term field fertilization alters the diversity of autotrophic bacteria based on the ribulose-1,5-biphosphate carboxylase/oxygenase (RubisCO) large-subunit genes in paddy soil.
[19157743] Distribution and diversity of autotrophic bacteria in groundwater systems based on the analysis of RubisCO genotypes.
[15669498] [Molecular genetic diversity of phytoplankton rbcL gene in Jiaozhou Bay].
[15640185] Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils.
[12704564] Diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes from groundwater and aquifer microorganisms.
[11282630] Phylogenetic diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes from deep-sea microorganisms.
[11050550] A universal molecular method for identifying underground plant parts to species.
[8555449] Divergent evolution of two plastid genes, rbcL and atpB, in a non-photosynthetic parasitic plant.
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