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S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)

 A0A1B4X7R6_9PSED        Unreviewed;       396 AA.
A0A1B4X7R6;
02-NOV-2016, integrated into UniProtKB/TrEMBL.
02-NOV-2016, sequence version 1.
05-DEC-2018, entry version 11.
RecName: Full=S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086};
Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};
EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086};
AltName: Full=MAT {ECO:0000256|HAMAP-Rule:MF_00086};
AltName: Full=Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086};
Name=metK {ECO:0000256|HAMAP-Rule:MF_00086};
ORFNames=LAB08_5589 {ECO:0000313|EMBL:BAV30859.1};
Pseudomonas sp. LAB-08.
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
NCBI_TaxID=143813 {ECO:0000313|EMBL:BAV30859.1, ECO:0000313|Proteomes:UP000218595};
[1] {ECO:0000313|EMBL:BAV30859.1, ECO:0000313|Proteomes:UP000218595}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Suzuki K., Fatma A., Inuzuka Y., Tashiro Y., Futamata H.;
"Draft genome sequence of Pseudomonassp. LAB-08 isolated from TCE
contaminated aquifer soil.";
Submitted (APR-2016) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Catalyzes the formation of S-adenosylmethionine (AdoMet)
from methionine and ATP. The overall synthetic reaction is
composed of two sequential steps, AdoMet formation and the
subsequent tripolyphosphate hydrolysis which occurs prior to
release of AdoMet from the enzyme. {ECO:0000256|HAMAP-
Rule:MF_00086}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + H2O + L-methionine = diphosphate + phosphate + S-
adenosyl-L-methionine; Xref=Rhea:RHEA:21080, ChEBI:CHEBI:15377,
ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:43474,
ChEBI:CHEBI:57844, ChEBI:CHEBI:59789; EC=2.5.1.6;
Evidence={ECO:0000256|HAMAP-Rule:MF_00086};
-!- COFACTOR:
Name=K(+); Xref=ChEBI:CHEBI:29103;
Evidence={ECO:0000256|HAMAP-Rule:MF_00086};
Note=Binds 1 potassium ion per subunit. {ECO:0000256|HAMAP-
Rule:MF_00086};
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000256|HAMAP-Rule:MF_00086};
Note=Binds 2 divalent ions per subunit. {ECO:0000256|HAMAP-
Rule:MF_00086};
-!- PATHWAY: Amino-acid biosynthesis; S-adenosyl-L-methionine
biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.
{ECO:0000256|HAMAP-Rule:MF_00086}.
-!- SUBUNIT: Homotetramer; dimer of dimers. {ECO:0000256|HAMAP-
Rule:MF_00086}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00086,
ECO:0000256|RuleBase:RU000542}.
-!- SIMILARITY: Belongs to the AdoMet synthase family.
{ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU004462}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_00086}.
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AP017423; BAV30859.1; -; Genomic_DNA.
UniPathway; UPA00315; UER00080.
Proteomes; UP000218595; Chromosome.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004478; F:methionine adenosyltransferase activity; IEA:UniProtKB-UniRule.
GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-UniRule.
GO; GO:0006556; P:S-adenosylmethionine biosynthetic process; IEA:UniProtKB-UniPathway.
HAMAP; MF_00086; S_AdoMet_synth1; 1.
InterPro; IPR022631; ADOMET_SYNTHASE_CS.
InterPro; IPR022630; S-AdoMet_synt_C.
InterPro; IPR022629; S-AdoMet_synt_central.
InterPro; IPR022628; S-AdoMet_synt_N.
InterPro; IPR002133; S-AdoMet_synthetase.
InterPro; IPR022636; S-AdoMet_synthetase_sfam.
PANTHER; PTHR11964; PTHR11964; 1.
Pfam; PF02773; S-AdoMet_synt_C; 1.
Pfam; PF02772; S-AdoMet_synt_M; 1.
Pfam; PF00438; S-AdoMet_synt_N; 1.
PIRSF; PIRSF000497; MAT; 1.
SUPFAM; SSF55973; SSF55973; 3.
TIGRFAMs; TIGR01034; metK; 1.
PROSITE; PS00376; ADOMET_SYNTHASE_1; 1.
PROSITE; PS00377; ADOMET_SYNTHASE_2; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|HAMAP-Rule:MF_00086};
Complete proteome {ECO:0000313|Proteomes:UP000218595};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00086};
Magnesium {ECO:0000256|HAMAP-Rule:MF_00086,
ECO:0000256|RuleBase:RU000542};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00086,
ECO:0000256|RuleBase:RU000542};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00086};
One-carbon metabolism {ECO:0000256|HAMAP-Rule:MF_00086};
Potassium {ECO:0000256|HAMAP-Rule:MF_00086,
ECO:0000256|RuleBase:RU000542};
Transferase {ECO:0000256|HAMAP-Rule:MF_00086,
ECO:0000313|EMBL:BAV30859.1}.
DOMAIN 6 102 S-AdoMet_synt_N.
{ECO:0000259|Pfam:PF00438}.
DOMAIN 115 232 S-AdoMet_synt_M.
{ECO:0000259|Pfam:PF02772}.
DOMAIN 234 365 S-AdoMet_synt_C.
{ECO:0000259|Pfam:PF02773}.
NP_BIND 165 167 ATP. {ECO:0000256|HAMAP-Rule:MF_00086}.
NP_BIND 246 247 ATP. {ECO:0000256|HAMAP-Rule:MF_00086}.
REGION 100 110 Flexible loop. {ECO:0000256|HAMAP-
Rule:MF_00086}.
METAL 18 18 Magnesium. {ECO:0000256|HAMAP-
Rule:MF_00086}.
METAL 44 44 Potassium. {ECO:0000256|HAMAP-
Rule:MF_00086}.
BINDING 16 16 ATP. {ECO:0000256|HAMAP-Rule:MF_00086}.
BINDING 57 57 Methionine. {ECO:0000256|HAMAP-
Rule:MF_00086}.
BINDING 100 100 Methionine. {ECO:0000256|HAMAP-
Rule:MF_00086}.
BINDING 240 240 ATP; shared with neighboring subunit.
{ECO:0000256|HAMAP-Rule:MF_00086}.
BINDING 240 240 Methionine; shared with neighboring
subunit. {ECO:0000256|HAMAP-
Rule:MF_00086}.
BINDING 263 263 ATP; via amide nitrogen; shared with
neighboring subunit. {ECO:0000256|HAMAP-
Rule:MF_00086}.
BINDING 267 267 ATP; shared with neighboring subunit.
{ECO:0000256|HAMAP-Rule:MF_00086}.
BINDING 271 271 Methionine. {ECO:0000256|HAMAP-
Rule:MF_00086}.
SEQUENCE 396 AA; 42611 MW; 0AF4516A1211FCD8 CRC64;
MSEYSLFTSE SVSEGHPDKI ADQISDAVLD AIIAEDKFAR VACETLVKTG VAIIAGEVTT
SAWVDLEQIV RDVITDIGYT SSNVGFDGAT CGVMNIIGKQ SPDINQGVDR AKPEDQGAGD
QGLMFGYASN ETDVLMPAPI TFSHQLVQRQ AEARKSGLLP WLRPDAKSQV TCRYENGKVV
GIDAVVLSTQ HNPEVSYNDL REGVMELIVK HVLPAELLTK DTQFHINPTG QFIIGGPVGD
CGLTGRKIIV DSYGGMARHG GGAFSGKDPS KVDRSAAYAG RYVAKNIVAA GLAERCEIQV
SYAIGVAQPT SISLNTFGTG KISDDKIVKL VREVFDLRPY AITKMLDLLH PMYQETAAYG
HFGRTPATKT VGDDTFTTFT WEKTDRADAL RSAAGL


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Pathways :
WP1403: AMPK signaling
WP1422: Sphingolipid Metabolism
WP1423: Ganglio Sphingolipid Metabolism
WP1424: Globo Sphingolipid Metabolism
WP1461: Photosynthetic Carbon Reduction
WP1621: Arginine and proline metabolism
WP1708: Terpenoid backbone biosynthesis
WP2199: Seed Development
WP2208: Cardiolipin Biosynthesis
WP2210: Oryzalexin S biosynthesis
WP2211: Geranylgeranyldiphosphate biosynthesis II (plastidic)
WP2248: anthocyanin biosynthesis
WP2340: Thiamine (vitamin B1) biosynthesis and salvage
WP2341: vitamin B1 (thiamin) biosynthesis and salvage pathway
WP296: TCA Cycle - biocyc
WP626: Abscisic Acid Biosynthesis
WP668: Octadecanoid Pathway
WP677: Momilactone biosynthesis
WP1640: Cysteine and methionine metabolism
WP335: Methionine Biosynthesis
WP423: Threonine and Methionine biosynthesis
WP46: Methionine Degradation

Related Genes :
[METK3 At2g36880 T1J8.6] S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)
[SAM1 At1g02500 T14P4.17 T14P4_22] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[SAM2 At4g01850 T7B11.11] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[METK4 MTO3 SAMS3 At3g17390 MGD8.23] S-adenosylmethionine synthase 4 (AdoMet synthase 4) (EC 2.5.1.6) (Methionine adenosyltransferase 4) (MAT 4)
[SAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAMS1] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[SAMS3] S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)
[metK MSMEG_3055 MSMEI_2979] S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)
[MAT2A QtsA-10874] S-adenosylmethionine synthase isoform type-2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAMS3; SAMS5] S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)
[eth-1 B16B8.070 NCU02657] S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (Ethionine resistance protein 1) (Methionine adenosyltransferase) (MAT)
[SAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAMS1] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[SAMS4] S-adenosylmethionine synthase 4 (AdoMet synthase 4) (EC 2.5.1.6) (Methionine adenosyltransferase 4) (MAT 4)
[cmaA2 cma2 CMAS-2 Rv0503c MTCY20G9.30c] Cyclopropane mycolic acid synthase 2 (CMAS) (EC 2.1.1.79) (Cyclopropane-fatty-acyl-phospholipid synthase) (CFA synthase) (Cyclopropane fatty acid synthase) (Mycolic acid methyltransferase) (MA-MT) (S-adenosylmethionine-dependent methyltransferase) (AdoMet-MT) (SAM-MT)
[SAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAMS1] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[mmaA2 mma2 Rv0644c] Cyclopropane mycolic acid synthase MmaA2 (CMAS) (EC 2.1.1.79) (Cyclopropane-fatty-acyl-phospholipid synthase) (CFA synthase) (Mycolic acid methyltransferase) (MA-MT) (S-adenosylmethionine-dependent methyltransferase) (AdoMet-MT) (SAM-MT)
[ACS5 ACC5 ETO2 At5g65800 F6H11.90 MPA24.15] 1-aminocyclopropane-1-carboxylate synthase 5 (ACC synthase 5) (EC 4.4.1.14) (Ethylene-overproduction protein 2) (S-adenosyl-L-methionine methylthioadenosine-lyase 5)
[SAM2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAM1] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[metK OR221_0401] S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)
[SAM1 SAMS OsI_017696] S-adenosylmethionine synthase 1 (AdoMet synthase 1) (EC 2.5.1.6) (Methionine adenosyltransferase 1) (MAT 1)
[metK OR1_01056] S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)
[metK OR1_02584] S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)
[al-3 B8P8.010 NCU01427] Geranylgeranyl pyrophosphate synthase (GGPP synthase) (GGPPSase) (EC 2.5.1.-) ((2E,6E)-farnesyl diphosphate synthase) (Albino-3 protein) (Dimethylallyltranstransferase) (EC 2.5.1.1) (Farnesyl diphosphate synthase) (Farnesyltranstransferase) (EC 2.5.1.29) (Geranylgeranyl diphosphate synthase) (Geranyltranstransferase) (EC 2.5.1.10)
[SAM3] S-adenosylmethionine synthase 3 (AdoMet synthase 3) (EC 2.5.1.6) (Methionine adenosyltransferase 3) (MAT 3)
[SAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[SAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)
[MSAMS2] S-adenosylmethionine synthase 2 (AdoMet synthase 2) (EC 2.5.1.6) (Methionine adenosyltransferase 2) (MAT 2)

Bibliography :
[27421658] Lysine acetylation regulates the activity of Escherichia coli S-adenosylmethionine synthase.
[26289392] Mudd's disease (MAT I/III deficiency): a survey of data for MAT1A homozygotes and compound heterozygotes.
[23993429] Clinical and metabolic findings in patients with methionine adenosyltransferase I/III deficiency detected by newborn screening.
[23973726] Neurologically normal development of a patient with severe methionine adenosyltransferase I/III deficiency after continuing dietary methionine restriction.
[23665184] Pleiotropic effects of methionine adenosyltransferases deregulation as determinants of liver cancer progression and prognosis.
[21308989] Hypermethioninemias of genetic and non-genetic origin: A review.
[12742526] Altered methionine metabolism in long living Ames dwarf mice.
[12705496] Methionine adenosyltransferase I/III deficiency: two Korean compound heterozygous siblings with a novel mutation.
[12145770] Elevated plasma total homocysteine in severe methionine adenosyltransferase I/III deficiency.
[10674710] Molecular genetics of hepatic methionine adenosyltransferase deficiency.
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