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Sec1 family domain-containing protein 1 (SLY1 homolog) (Sly1p) (Syntaxin-binding protein 1-like 2) (Vesicle transport-related protein Ra410)

 SCFD1_RAT               Reviewed;         637 AA.
Q62991; Q62843;
16-AUG-2004, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
07-APR-2021, entry version 140.
RecName: Full=Sec1 family domain-containing protein 1;
AltName: Full=SLY1 homolog;
Short=Sly1p;
AltName: Full=Syntaxin-binding protein 1-like 2;
AltName: Full=Vesicle transport-related protein Ra410;
Name=Scfd1; Synonyms=Ra410, Sly1, Stxbp1l2;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 21-30; 81-92; 211-219 AND
554-561, FUNCTION, AND INTERACTION WITH STX5A.
STRAIN=Sprague-Dawley; TISSUE=Liver;
PubMed=8663406; DOI=10.1074/jbc.271.27.15866;
Dascher C., Balch W.E.;
"Mammalian Sly1 regulates syntaxin 5 function in endoplasmic reticulum to
Golgi transport.";
J. Biol. Chem. 271:15866-15869(1996).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INDUCTION, TISSUE SPECIFICITY, AND
SUBCELLULAR LOCATION.
TISSUE=Brain;
PubMed=9195952; DOI=10.1074/jbc.272.26.16438;
Matsuo N., Ogawa S., Takagi T., Wanaka A., Mori T., Matsuyama T.,
Pinsky D.J., Stern D.M., Tohyama M.;
"Cloning of a putative vesicle transport-related protein, RA410, from
cultured rat astrocytes and its expression in ischemic rat brain.";
J. Biol. Chem. 272:16438-16444(1997).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 9-637, AND TISSUE SPECIFICITY.
TISSUE=Brain;
PubMed=8647468; DOI=10.1016/0378-1119(95)00819-5;
Peterson M.R., Hsu S.C., Scheller R.H.;
"A mammalian homologue of SLY1, a yeast gene required for transport from
endoplasmic reticulum to Golgi.";
Gene 169:293-294(1996).
[4]
INTERACTION WITH STX17.
PubMed=10930465; DOI=10.1091/mbc.11.8.2719;
Steegmaier M., Oorschot V., Klumperman J., Scheller R.H.;
"Syntaxin 17 is abundant in steroidogenic cells and implicated in smooth
endoplasmic reticulum membrane dynamics.";
Mol. Biol. Cell 11:2719-2731(2000).
[5]
FUNCTION, AND INTERACTION WITH COG4.
PubMed=19536132; DOI=10.1038/emboj.2009.168;
Laufman O., Kedan A., Hong W., Lev S.;
"Direct interaction between the COG complex and the SM protein, Sly1, is
required for Golgi SNARE pairing.";
EMBO J. 28:2006-2017(2009).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-32 AND SER-298, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22673903; DOI=10.1038/ncomms1871;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C.,
Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14 different rat
organs and tissues.";
Nat. Commun. 3:876-876(2012).
-!- FUNCTION: Plays a role in SNARE-pin assembly and Golgi-to-ER retrograde
transport via its interaction with COG4. Involved in vesicular
transport between the endoplasmic reticulum and the Golgi.
{ECO:0000269|PubMed:19536132, ECO:0000269|PubMed:8663406,
ECO:0000269|PubMed:9195952}.
-!- SUBUNIT: Interacts with STX17 (Probable). Interacts with the COG
complex via COG4. Interacts with STX5A. {ECO:0000269|PubMed:10930465,
ECO:0000269|PubMed:19536132, ECO:0000269|PubMed:8663406, ECO:0000305}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:9195952}.
Endoplasmic reticulum membrane {ECO:0000269|PubMed:9195952}; Peripheral
membrane protein {ECO:0000269|PubMed:9195952}. Golgi apparatus, Golgi
stack membrane {ECO:0000269|PubMed:9195952}; Peripheral membrane
protein {ECO:0000269|PubMed:9195952}.
-!- TISSUE SPECIFICITY: Highly expressed in testis. Detected at lower
levels in brain, astrocytes, heart and small intestine.
{ECO:0000269|PubMed:8647468, ECO:0000269|PubMed:9195952}.
-!- INDUCTION: Up-regulated in astrocytes upon reoxygenation after hypoxia.
{ECO:0000269|PubMed:9195952}.
-!- SIMILARITY: Belongs to the STXBP/unc-18/SEC1 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAB08009.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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EMBL; U57687; AAC52636.1; -; mRNA.
EMBL; D79221; BAA24276.1; -; mRNA.
EMBL; U35364; AAB08009.1; ALT_INIT; mRNA.
PIR; JC4674; JC4674.
RefSeq; NP_062237.1; NM_019364.1.
PDB; 1Y9J; NMR; -; A=2-147.
PDBsum; 1Y9J; -.
SMR; Q62991; -.
BioGRID; 248542; 1.
CORUM; Q62991; -.
IntAct; Q62991; 3.
STRING; 10116.ENSRNOP00000039132; -.
iPTMnet; Q62991; -.
PhosphoSitePlus; Q62991; -.
jPOST; Q62991; -.
PaxDb; Q62991; -.
PRIDE; Q62991; -.
Ensembl; ENSRNOT00000040548; ENSRNOP00000039132; ENSRNOG00000031203.
GeneID; 54350; -.
KEGG; rno:54350; -.
UCSC; RGD:619828; rat.
CTD; 23256; -.
RGD; 619828; Scfd1.
eggNOG; KOG1301; Eukaryota.
GeneTree; ENSGT00550000074845; -.
HOGENOM; CLU_016216_3_1_1; -.
InParanoid; Q62991; -.
OMA; DRQLDNF; -.
OrthoDB; 917326at2759; -.
PhylomeDB; Q62991; -.
TreeFam; TF105740; -.
Reactome; R-RNO-204005; COPII-mediated vesicle transport.
EvolutionaryTrace; Q62991; -.
PRO; PR:Q62991; -.
Proteomes; UP000002494; Chromosome 6.
Bgee; ENSRNOG00000031203; Expressed in jejunum and 21 other tissues.
Genevisible; Q62991; RN.
GO; GO:0005801; C:cis-Golgi network; ISO:RGD.
GO; GO:0005829; C:cytosol; IBA:GO_Central.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0032580; C:Golgi cisterna membrane; IEA:UniProtKB-SubCell.
GO; GO:0000139; C:Golgi membrane; IBA:GO_Central.
GO; GO:0005798; C:Golgi-associated vesicle; IDA:RGD.
GO; GO:0005886; C:plasma membrane; IDA:RGD.
GO; GO:0047485; F:protein N-terminus binding; IPI:UniProtKB.
GO; GO:0044877; F:protein-containing complex binding; IDA:UniProtKB.
GO; GO:0019905; F:syntaxin binding; IDA:RGD.
GO; GO:0000902; P:cell morphogenesis; ISS:ParkinsonsUK-UCL.
GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
GO; GO:0006886; P:intracellular protein transport; IBA:GO_Central.
GO; GO:1902902; P:negative regulation of autophagosome assembly; ISO:RGD.
GO; GO:0006892; P:post-Golgi vesicle-mediated transport; IDA:RGD.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IMP:RGD.
GO; GO:0051223; P:regulation of protein transport; ISO:RGD.
GO; GO:0001666; P:response to hypoxia; IEP:RGD.
GO; GO:0009636; P:response to toxic substance; ISO:RGD.
GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; IMP:UniProtKB.
GO; GO:1901998; P:toxin transport; ISO:RGD.
GO; GO:0016192; P:vesicle-mediated transport; IBA:GO_Central.
Gene3D; 3.40.50.1910; -; 1.
Gene3D; 3.40.50.2060; -; 1.
Gene3D; 3.90.830.10; -; 1.
InterPro; IPR043154; Sec-1-like_dom1.
InterPro; IPR027482; Sec-1-like_dom2.
InterPro; IPR043127; Sec-1-like_dom3a.
InterPro; IPR001619; Sec1-like.
InterPro; IPR036045; Sec1-like_sf.
PANTHER; PTHR11679; PTHR11679; 1.
Pfam; PF00995; Sec1; 1.
PIRSF; PIRSF005715; VPS45_Sec1; 1.
SUPFAM; SSF56815; SSF56815; 1.
1: Evidence at protein level;
3D-structure; Cytoplasm; Direct protein sequencing; Endoplasmic reticulum;
ER-Golgi transport; Golgi apparatus; Membrane; Phosphoprotein;
Protein transport; Reference proteome; Transport.
CHAIN 1..637
/note="Sec1 family domain-containing protein 1"
/id="PRO_0000206289"
MOD_RES 32
/note="Phosphoserine"
/evidence="ECO:0007744|PubMed:22673903"
MOD_RES 298
/note="Phosphoserine"
/evidence="ECO:0007744|PubMed:22673903"
MOD_RES 523
/note="Phosphoserine"
/evidence="ECO:0000250|UniProtKB:Q8WVM8"
HELIX 9..21
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 31..34
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 39..43
/evidence="ECO:0007744|PDB:1Y9J"
HELIX 45..51
/evidence="ECO:0007744|PDB:1Y9J"
TURN 52..54
/evidence="ECO:0007744|PDB:1Y9J"
HELIX 57..62
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 65..70
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 84..87
/evidence="ECO:0007744|PDB:1Y9J"
HELIX 91..103
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 106..115
/evidence="ECO:0007744|PDB:1Y9J"
HELIX 119..130
/evidence="ECO:0007744|PDB:1Y9J"
STRAND 135..139
/evidence="ECO:0007744|PDB:1Y9J"
TURN 143..145
/evidence="ECO:0007744|PDB:1Y9J"
SEQUENCE 637 AA; 72263 MW; 9ABFBBEBD2862341 CRC64;
MVGSKMAASI RERQTVALKR MLNFNVPHVK NSPGEPVWKV LIYDRFGQDI ISPLLSVKEL
RDMGITLHLL LHSDRDPIRD VPAVYFVMPT EENIDRLCQD LRNQLYESYY LNFISAISRS
KLEDIANAAL AANAVTQVAK VFDQYLNFIT LEEDMFVLCN QNKELVSYRA INRPDITDTE
METVMDTIVD SLFCFFVTLG AVPIIRCSRG TAAEMVAVKL DKKLRENLRD ARNSLFTGDP
LGTGQFSFQR PLLVLVDRNI DLATPLHHTW TYQALVHDVL DFHLNRVNLE ESTGVENSPT
GARPKRKNKK SYDLTPVDKF WQKHKGSPFP EVAESVQQEL ESYRAQEDEV KRLKSIMGLE
GEDEGAISML SDNTAKLTSA VSSLPELLEK KRLIDLHTNV ATAVLEHIKA RKLDVYFEYE
EKIMSKTTLD KSLLDVISDP DAGTPEDKMR LFLIYYISAQ QAPSEVDLEQ YKKALTDAGC
NLSPLQYIKQ WKAFAKMAST PASYGNTTTK PMGLLSRVMN TGSQFVMEGV KNLVLKQQNL
PVTRILDNLM EMKSNPETDD YRYFDPKMLR SNDSSVPRNK SPFQEAIVFV VGGGNYIEYQ
NLVDYIKGKQ GKHILYGCSE IFNATQFIKQ LSQLGQK


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EIAAB37535 Mouse,Mus musculus,Neuronal Sec1,Scfd2,Sec1 family domain-containing protein 2,Stxbp1l1,Syntaxin-binding protein 1-like 1
EIAAB37534 Mouse,Mus musculus,Scfd1,Sec1 family domain-containing protein 1,Stxbp1l2,Syntaxin-binding protein 1-like 2
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EIAAB40491 Bos taurus,Bovine,N-Sec1,p67,Protein unc-18 homolog 1,Protein unc-18 homolog A,STXBP1,Syntaxin-binding protein 1,Unc18-1,UNC18A,Unc-18A
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EIAAB37780 BCL2_adenovirus E1B 19 kDa protein-interacting protein 1,BNIP1,Homo sapiens,Human,NIP1,SEC20L,Transformation-related gene 8 protein,TRG8,TRG-8,Vesicle transport protein SEC20
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EIAAB46026 Rat,Rattus norvegicus,Vesicle transport through interaction with t-SNAREs homolog 1A,Vesicle transport v-SNARE protein Vti1-like 2,Vti1a,Vti1l2,Vti1-rp2
EIAAB46028 Rat,Rattus norvegicus,Vesicle transport through interaction with t-SNAREs homolog 1B,Vesicle transport v-SNARE protein Vti1-like 1,Vti1b,Vti1l1,Vti1-rp1
EIAAB46029 Mouse,Mus musculus,Vesicle transport through interaction with t-SNAREs homolog 1B,Vesicle transport v-SNARE protein Vti1-like 1,Vti1b,Vti1l1,Vti1-rp1
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EIAAB38052 Mouse,Mus musculus,SFT2 domain-containing protein 2,Sft2d2,Vesicle transport protein SFT2B
EIAAB38048 Rat,Rattus norvegicus,SFT2 domain-containing protein 1,Sft2d1,Vesicle transport protein SFT2A
EIAAB38054 Mouse,Mus musculus,SFT2 domain-containing protein 3,Sft2d3,Vesicle transport protein SFT2C
Pathways :
WP1689: Porphyrin and chlorophyll metabolism
WP731: Sterol regulatory element binding protein related
WP1616: ABC transporters
WP1713: Two-component system
WP2292: Chemokine signaling pathway
WP1502: Mitochondrial biogenesis
WP2272: Pathogenic Escherichia coli infection
WP2199: Seed Development
WP1909: Signal regulatory protein (SIRP) family interactions
WP1531: Vitamin D synthesis
WP1613: 1,4-Dichlorobenzene degradation
WP1678: Nucleotide excision repair
WP2032: TSH signaling pathway
WP211: BMP signaling pathway
WP1625: Base excision repair
WP1888: Post-translational protein modification
WP525: Mitochondrial Unfolded-Protein Response
WP1654: gamma-Hexachlorocyclohexane degradation
WP1371: G Protein Signaling Pathways
WP1693: Purine metabolism
WP2218: sGC
WP1661: Glyoxylate and dicarboxylate metabolism
WP1672: Mismatch repair
WP1566: Citrate cycle (TCA cycle)
WP1676: Non-homologous end-joining

Related Genes :
[SLY1 YDR189W YD9346.01 YD9395.22] Protein SLY1 (Suppressor of loss of YPT1 protein 1)
[STXBP1 UNC18A] Syntaxin-binding protein 1 (MUNC18-1) (N-Sec1) (Protein unc-18 homolog 1) (Unc18-1) (Protein unc-18 homolog A) (Unc-18A) (p67)
[DGK1 HSD1 YOR311C O6111] CTP-dependent diacylglycerol kinase 1 (EC 2.7.1.174) (Diglyceride kinase 1) (DAG kinase 1) (High-copy suppressor of SLY1 defect protein 1)
[KN SYP111 At1g08560 F22O13.4] Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111)
[VTI1A] Vesicle transport through interaction with t-SNAREs homolog 1A (Vesicle transport v-SNARE protein Vti1-like 2) (Vti1-rp2)
[Vti1a Vti1 Vti1l2] Vesicle transport through interaction with t-SNAREs homolog 1A (Vesicle transport v-SNARE protein Vti1-like 2) (Vti1-rp2)
[Sec1 Fut3] Galactoside 2-alpha-L-fucosyltransferase Sec1 (EC 2.4.1.-) (Alpha(1,2)FT 3) (GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 3) (Secretory blood group protein 1)
[DSL1 YNL258C N0842] Protein transport protein DSL1 (Dependent on SLY1-20 protein 1)
[Vti1a Vti1l2] Vesicle transport through interaction with t-SNAREs homolog 1A (Vesicle transport v-SNARE protein Vti1-like 2) (Vti1-rp2)
[unc-64 F56A8.7] Syntaxin-1A homolog (Uncoordinated protein 64)
[ACE2 UNQ868/PRO1885] Angiotensin-converting enzyme 2 (EC 3.4.17.23) (Angiotensin-converting enzyme homolog) (ACEH) (Angiotensin-converting enzyme-related carboxypeptidase) (ACE-related carboxypeptidase) (EC 3.4.17.-) (Metalloprotease MPROT15) [Cleaved into: Processed angiotensin-converting enzyme 2]
[Stx1a Sap] Syntaxin-1A (Neuron-specific antigen HPC-1) (Synaptotagmin-associated 35 kDa protein) (P35A)
[VTI1 YMR197C YM9646.10C] t-SNARE VTI1 (Qb-SNARE VTI1) (VPS10-interacting protein 1) (Vesicle transport v-SNARE protein VTI1)
[VTI12 VTI1B At1g26670 T24P13.5] Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle soluble NSF attachment protein receptor VTI1b) (AtVTI1b) (Vesicle transport v-SNARE protein VTI1b)
[Vti1b Vti1l1] Vesicle transport through interaction with t-SNAREs homolog 1B (Vesicle transport v-SNARE protein Vti1-like 1) (Vti1-rp1)
[Bloc1s6 P2 Pa Pldn] Biogenesis of lysosome-related organelles complex 1 subunit 6 (BLOC-1 subunit 6) (Pallid protein) (Pallidin) (Syntaxin 13-interacting protein)
[UFE1 YOR075W YOR29-26] Syntaxin UFE1
[SEC39 DSL3 YLR440C] Protein transport protein SEC39 (Dependent on SLY1-20 protein 3)
[SLC27A5 ACSB ACSVL6 FACVL3 FATP5] Bile acyl-CoA synthetase (BACS) (EC 6.2.1.7) (Bile acid-CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase) (Fatty acid transport protein 5) (FATP-5) (Fatty-acid-coenzyme A ligase, very long-chain 3) (Solute carrier family 27 member 5) (Very long-chain acyl-CoA synthetase homolog 2) (VLCS-H2) (VLCSH2) (Very long-chain acyl-CoA synthetase-related protein) (VLACS-related) (VLACSR)
[cdc-48.1 C06A1.1] Transitional endoplasmic reticulum ATPase homolog 1 (EC 3.6.4.6) (Cell division cycle-related protein 48.1) (p97/CDC48 homolog 1)
[STXBP5L KIAA1006 LLGL4] Syntaxin-binding protein 5-like (Lethal(2) giant larvae protein homolog 4) (Tomosyn-2)
[Stxbp5l Llgl4] Syntaxin-binding protein 5-like (Lethal(2) giant larvae protein homolog 4) (Tomosyn-2)
[Uso1 Vdp] General vesicular transport factor p115 (Protein USO1 homolog) (Transcytosis-associated protein) (TAP) (Vesicle-docking protein)
[USO1 VDP] General vesicular transport factor p115 (Protein USO1 homolog) (Transcytosis-associated protein) (TAP) (Vesicle-docking protein)
[Sec22b Sec22l1] Vesicle-trafficking protein SEC22b (ER-Golgi SNARE of 24 kDa) (ERS-24) (ERS24) (SEC22 vesicle-trafficking protein homolog B) (SEC22 vesicle-trafficking protein-like 1)
[Mcl1] Induced myeloid leukemia cell differentiation protein Mcl-1 homolog (Bcl-2-related protein EAT/mcl1)
[SEC22B SEC22L1] Vesicle-trafficking protein SEC22b (ER-Golgi SNARE of 24 kDa) (ERS-24) (ERS24) (SEC22 vesicle-trafficking protein homolog B) (SEC22 vesicle-trafficking protein-like 1)
[Sec22b Sec22l1] Vesicle-trafficking protein SEC22b (ER-Golgi SNARE of 24 kDa) (ERS-24) (ERS24) (SEC22 vesicle-trafficking protein homolog B) (SEC22 vesicle-trafficking protein-like 1) (mSec22b)
[ZBED1 ALTE DREF hDREF KIAA0785 TRAMP] E3 SUMO-protein ligase ZBED1 (EC 2.3.2.-) (DNA replication-related element-binding factor) (Putative Ac-like transposable element) (Zinc finger BED domain-containing protein 1) (dREF homolog)
[IL36RN FIL1D IL1F5 IL1HY1 IL1L1 IL1RP3 UNQ1896/PRO4342] Interleukin-36 receptor antagonist protein (IL-36Ra) (FIL1 delta) (IL-1-related protein 3) (IL-1RP3) (Interleukin-1 HY1) (IL-1HY1) (Interleukin-1 delta) (IL-1 delta) (Interleukin-1 family member 5) (IL-1F5) (Interleukin-1 receptor antagonist homolog 1) (IL-1ra homolog 1) (Interleukin-1-like protein 1) (IL-1L1)

Bibliography :