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Set3 complex subunit hif2

 HIF2_SCHPO              Reviewed;         564 AA.
O74845;
11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
16-JAN-2019, entry version 124.
RecName: Full=Set3 complex subunit hif2;
Name=hif2; ORFNames=SPCC1235.09;
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
Schizosaccharomycetes; Schizosaccharomycetales;
Schizosaccharomycetaceae; Schizosaccharomyces.
NCBI_TaxID=284812;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=972 / ATCC 24843;
PubMed=11859360; DOI=10.1038/nature724;
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A.,
Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S.,
Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M.,
Collins M., Connor R., Cronin A., Davis P., Feltwell T., Fraser A.,
Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G.,
Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K.,
James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J.,
Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C.,
Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E.,
Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S.,
Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K.,
Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S.,
Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B.,
Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D.,
Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R.,
Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B.,
Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S.,
Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M.,
Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G.,
Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J.,
Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L.,
Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J.,
Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.;
"The genome sequence of Schizosaccharomyces pombe.";
Nature 415:871-880(2002).
[2]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=16823372; DOI=10.1038/nbt1222;
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S.,
Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S.,
Yoshida M.;
"ORFeome cloning and global analysis of protein localization in the
fission yeast Schizosaccharomyces pombe.";
Nat. Biotechnol. 24:841-847(2006).
[3]
IDENTIFICATION IN THE SET3 COMPLEX, AND IDENTIFICATION BY MASS
SPECTROMETRY.
PubMed=19040720; DOI=10.1186/gb-2008-9-11-r167;
Shevchenko A., Roguev A., Schaft D., Buchanan L., Habermann B.,
Sakalar C., Thomas H., Krogan N.J., Shevchenko A., Stewart A.F.;
"Chromatin Central: towards the comparative proteome by accurate
mapping of the yeast proteomic environment.";
Genome Biol. 9:R167.1-R167.22(2008).
[4]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-137, AND IDENTIFICATION
BY MASS SPECTROMETRY.
PubMed=18257517; DOI=10.1021/pr7006335;
Wilson-Grady J.T., Villen J., Gygi S.P.;
"Phosphoproteome analysis of fission yeast.";
J. Proteome Res. 7:1088-1097(2008).
-!- FUNCTION: Component of the set3 histone deacetylase complex which
is involved in chromatin remodeling and transcription regulation,
such as repression of the sporulation gene program.
-!- SUBUNIT: Component of the set3 histone deacetylase complex.
{ECO:0000269|PubMed:19040720}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:16823372}.
Nucleus {ECO:0000269|PubMed:16823372}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; CU329672; CAA21113.1; -; Genomic_DNA.
PIR; T40883; T40883.
RefSeq; NP_587735.1; NM_001022730.2.
ProteinModelPortal; O74845; -.
BioGrid; 275286; 103.
STRING; 4896.SPCC1235.09.1; -.
iPTMnet; O74845; -.
MaxQB; O74845; -.
PaxDb; O74845; -.
PRIDE; O74845; -.
EnsemblFungi; SPCC1235.09.1; SPCC1235.09.1:pep; SPCC1235.09.
GeneID; 2538701; -.
KEGG; spo:SPCC1235.09; -.
EuPathDB; FungiDB:SPCC1235.09; -.
PomBase; SPCC1235.09; hif2.
InParanoid; O74845; -.
KO; K04508; -.
OMA; NNHAKPM; -.
PhylomeDB; O74845; -.
PRO; PR:O74845; -.
Proteomes; UP000002485; Chromosome III.
GO; GO:0005829; C:cytosol; HDA:PomBase.
GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
GO; GO:0005634; C:nucleus; HDA:PomBase.
GO; GO:0070210; C:Rpd3L-Expanded complex; IDA:PomBase.
GO; GO:0034967; C:Set3 complex; IDA:PomBase.
GO; GO:0003714; F:transcription corepressor activity; IBA:GO_Central.
GO; GO:0070869; P:heterochromatin assembly involved in chromatin silencing; IC:PomBase.
GO; GO:0016575; P:histone deacetylation; ISO:PomBase.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISO:PomBase.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR006594; LisH.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR017986; WD40_repeat_dom.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF08513; LisH; 1.
Pfam; PF00400; WD40; 3.
SMART; SM00667; LisH; 1.
SMART; SM00320; WD40; 6.
SUPFAM; SSF50978; SSF50978; 1.
PROSITE; PS50896; LISH; 1.
PROSITE; PS50082; WD_REPEATS_2; 3.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
1: Evidence at protein level;
Chromatin regulator; Complete proteome; Cytoplasm; Nucleus;
Phosphoprotein; Reference proteome; Repeat; Transcription;
Transcription regulation; WD repeat.
CHAIN 1 564 Set3 complex subunit hif2.
/FTId=PRO_0000303899.
DOMAIN 2 34 LisH. {ECO:0000255|PROSITE-
ProRule:PRU00126}.
REPEAT 262 302 WD 1.
REPEAT 303 342 WD 2.
REPEAT 344 382 WD 3.
REPEAT 386 425 WD 4.
REPEAT 430 470 WD 5.
REPEAT 473 512 WD 6.
MOD_RES 137 137 Phosphoserine.
{ECO:0000269|PubMed:18257517}.
SEQUENCE 564 AA; 62758 MW; 11C836D2C295B389 CRC64;
MDTNQVNYII WRYLKECGYS HTKFAFERET GIQNLDKQWG STCQVGALVE ILQKGLQYVE
LEKHYVDNHS SNEEASKTSI DGESLVNENP CKLPFYLTVP HICETTLTKA DSTNGFCEHN
NSNDHQLKIL QDKGSGSPSS PVMPFKDKIE KRDIDITMAD ESNVEKDPAR PIAVYNSSPV
TEITEIKQVT FTGGEDIKSD FFKVIPTKHP VTCADWRPLL QENYHVYEFS IGMTNATLAS
VSICEEQNDF KAKTDYCLQS SFDNQDITGV AWNNSGSFLA YAFFSGVIEI YDSHGSQILS
FHNNKGPVLS LKWSGTDTYL AAGSADGTIT LFDQLKQTQY SIDTLASSVL DIEWISFDEF
VTSDVEGSLR VYKVDGKAPV STVSHAHDNS IVALRYNLRI SLLLTASSDT TVKLWSRGDA
GAFECLHVFS FSSPVNCIDW NLREGTPILA VASNSIVSMY NAISLQQLAV FMRHTAPVSA
LSFSHNGRYL ATGDTSGGVC IWSCKTAKLF KELGSDNSEL IAVTNVLPEE QVNFLRWSFD
DKDLLIGKQK KEIICCCDFL HDSL


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Pathways :
WP2272: Pathogenic Escherichia coli infection
WP1102: EBV LMP1 signaling
WP1122: Blood Clotting Cascade
WP1209: EBV LMP1 signaling
WP1224: EBV LMP1 signaling
WP1243: EBV LMP1 signaling
WP1278: EBV LMP1 signaling
WP1328: EBV LMP1 signaling
WP1566: Citrate cycle (TCA cycle)
WP1571: EBV LMP1 signaling
WP1602: Nicotine Activity on Dopaminergic Neurons
WP1614: 1- and 2-Methylnaphthalene degradation
WP1626: Benzoate degradation via CoA ligation
WP1634: Butanoate metabolism
WP1644: DNA replication
WP1655: Geraniol degradation
WP1663: Homologous recombination
WP1671: Methane metabolism
WP1672: Mismatch repair
WP1680: Oxidative phosphorylation
WP1693: Purine metabolism
WP1694: Pyrimidine metabolism
WP1711: Trinitrotoluene degradation
WP1718: Vitamin B6 metabolism
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Related Genes :
[hif2 SPCC1235.09] Set3 complex subunit hif2
[EPAS1 BHLHE73 HIF2A MOP2 PASD2] Endothelial PAS domain-containing protein 1 (EPAS-1) (Basic-helix-loop-helix-PAS protein MOP2) (Class E basic helix-loop-helix protein 73) (bHLHe73) (HIF-1-alpha-like factor) (HLF) (Hypoxia-inducible factor 2-alpha) (HIF-2-alpha) (HIF2-alpha) (Member of PAS protein 2) (PAS domain-containing protein 2)
[Epas1 Hif2a] Endothelial PAS domain-containing protein 1 (EPAS-1) (Hypoxia-inducible factor 2-alpha) (HIF-2-alpha) (HIF2-alpha)
[Epas1 Hif2a] Endothelial PAS domain-containing protein 1 (EPAS-1) (HIF-1-alpha-like factor) (HLF) (mHLF) (HIF-related factor) (HRF) (Hypoxia-inducible factor 2-alpha) (HIF-2-alpha) (HIF2-alpha)
[SET3 YKR029C] SET domain-containing protein 3
[set3 SPAC22E12.11c] SET domain-containing protein 3
[SUVH2 SDG3 SET3 At2g33290 F4P9.6] Histone-lysine N-methyltransferase family member SUVH2 (Cytosine-HMTase 2) (H3-K27-HMTase 2) (H4-K20-HMTase 2) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Protein SET DOMAIN GROUP 3) (Suppressor of variegation 3-9 homolog protein 2) (Su(var)3-9 homolog protein 2)
[SUVH3 SET3] Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3)
[EGLN3] Egl nine homolog 3 (EC 1.14.11.29) (HPH-1) (Hypoxia-inducible factor prolyl hydroxylase 3) (HIF-PH3) (HIF-prolyl hydroxylase 3) (HPH-3) (Prolyl hydroxylase domain-containing protein 3) (PHD3)
[Egln3] Egl nine homolog 3 (EC 1.14.11.29) (Hypoxia-inducible factor prolyl hydroxylase 3) (HIF-PH3) (HIF-prolyl hydroxylase 3) (HPH-3) (Prolyl hydroxylase domain-containing protein 3) (PHD3) (SM-20)
[HIF3A BHLHE17 MOP7 PASD7] Hypoxia-inducible factor 3-alpha (HIF-3-alpha) (HIF3-alpha) (Basic-helix-loop-helix-PAS protein MOP7) (Class E basic helix-loop-helix protein 17) (bHLHe17) (HIF3-alpha-1) (Inhibitory PAS domain protein) (IPAS) (Member of PAS protein 7) (PAS domain-containing protein 7)
[COI] Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Fragment)
[COI] Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Fragment)
[COI] Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Fragment)
[COI] Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Fragment)
[Egln3 Sm20] Egl nine homolog 3 (EC 1.14.11.29) (Hypoxia-inducible factor prolyl hydroxylase 3) (HIF-PH3) (HIF-prolyl hydroxylase 3) (HPH-3) (Prolyl hydroxylase domain-containing protein 3) (PHD3) (SM-20)
[SET3 orf19.7221 CAALFM_C114140CA] Histone-binding protein
[CPR1 CPH1 CYP1 SCC1 YDR155C YD8358.10C] Peptidyl-prolyl cis-trans isomerase (PPIase) (EC 5.2.1.8) (Cyclophilin) (CPH) (Cyclosporin A-binding protein) (PPI-II) (Rotamase)
[HST1 YOL068C] NAD-dependent protein deacetylase HST1 (EC 3.5.1.-) (Homologous to SIR2 protein 1) (Regulatory protein SIR2 homolog 1)
[EGLN1 C1orf12 PNAS-118 PNAS-137] Egl nine homolog 1 (EC 1.14.11.29) (Hypoxia-inducible factor prolyl hydroxylase 2) (HIF-PH2) (HIF-prolyl hydroxylase 2) (HPH-2) (Prolyl hydroxylase domain-containing protein 2) (PHD2) (SM-20)
[SNT1 YCR033W YCR33W YCR592] Probable DNA-binding protein SNT1 (SANT domain-containing protein 1)
[SIF2 EMB1 YBR103W YBR0832] SIR4-interacting protein SIF2
[EGLN2 EIT6] Egl nine homolog 2 (EC 1.14.11.29) (Estrogen-induced tag 6) (EIT-6) (HPH-3) (Hypoxia-inducible factor prolyl hydroxylase 1) (HIF-PH1) (HIF-prolyl hydroxylase 1) (HPH-1) (Prolyl hydroxylase domain-containing protein 1) (PHD1)
[EIF5B IF2 KIAA0741] Eukaryotic translation initiation factor 5B (eIF-5B) (EC 3.6.5.3) (Translation initiation factor IF-2)
[HOS2 YGL194C G1330] Probable histone deacetylase HOS2 (EC 3.5.1.98)
[Egln2] Egl nine homolog 2 (EC 1.14.11.29) (HPH-3) (Hypoxia-inducible factor prolyl hydroxylase 1) (HIF-PH1) (HIF-prolyl hydroxylase 1) (HPH-1) (Prolyl hydroxylase domain-containing protein 1) (PHD1)
[arnt2] Aryl hydrocarbon receptor nuclear translocator 2 (ARNT protein 2) (zfARNT2)
[SDHAF1 LYRM8] Succinate dehydrogenase assembly factor 1, mitochondrial (SDH assembly factor 1) (SDHAF1) (LYR motif-containing protein 8)
[Egln2] Egl nine homolog 2 (EC 1.14.11.29) (Falkor) (Hypoxia-inducible factor prolyl hydroxylase 1) (HIF-PH1) (HIF-prolyl hydroxylase 1) (HPH-1) (Prolyl hydroxylase domain-containing protein 1) (PHD1)
[infB hif2 VNG_1997G] Probable translation initiation factor IF-2

Bibliography :
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