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Succinate--CoA ligase [ADP-forming] subunit beta (EC 6 2 1 5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)

 SUCC_PSEAE              Reviewed;         388 AA.
P53593; Q9X5W1;
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
08-DEC-2000, sequence version 2.
10-FEB-2021, entry version 142.
RecName: Full=Succinate--CoA ligase [ADP-forming] subunit beta {ECO:0000255|HAMAP-Rule:MF_00558};
EC=6.2.1.5 {ECO:0000255|HAMAP-Rule:MF_00558, ECO:0000269|PubMed:10671455};
AltName: Full=Succinyl-CoA synthetase subunit beta {ECO:0000255|HAMAP-Rule:MF_00558};
Short=SCS-beta {ECO:0000255|HAMAP-Rule:MF_00558};
Name=sucC {ECO:0000255|HAMAP-Rule:MF_00558}; OrderedLocusNames=PA1588;
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1).
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
NCBI_TaxID=208964;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND CATALYTIC ACTIVITY.
STRAIN=ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
PRS 101 / PAO1;
PubMed=10671455; DOI=10.1128/jb.182.5.1333-1339.2000;
Kapatral V., Bina X., Chakrabarty A.M.;
"Succinyl coenzyme A synthetase of Pseudomonas aeruginosa with a broad
specificity for nucleoside triphosphate (NTP) synthesis modulates
specificity for NTP synthesis by the 12-kilodalton form of nucleoside
diphosphate kinase.";
J. Bacteriol. 182:1333-1339(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
PRS 101 / PAO1;
PubMed=10984043; DOI=10.1038/35023079;
Stover C.K., Pham X.-Q.T., Erwin A.L., Mizoguchi S.D., Warrener P.,
Hickey M.J., Brinkman F.S.L., Hufnagle W.O., Kowalik D.J., Lagrou M.,
Garber R.L., Goltry L., Tolentino E., Westbrock-Wadman S., Yuan Y.,
Brody L.L., Coulter S.N., Folger K.R., Kas A., Larbig K., Lim R.M.,
Smith K.A., Spencer D.H., Wong G.K.-S., Wu Z., Paulsen I.T., Reizer J.,
Saier M.H. Jr., Hancock R.E.W., Lory S., Olson M.V.;
"Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic
pathogen.";
Nature 406:959-964(2000).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 239-388.
STRAIN=ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
PRS 101 / PAO1;
PubMed=8581173; DOI=10.1099/13500872-142-1-79;
Liao X., Charlebois I., Ouellet C., Morency M.J., Dewar K., Lightfoot J.,
Foster J., Siehnel R., Schweizer H., Lam J.S., Hancock R.E., Levesque R.C.;
"Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1
chromosome.";
Microbiology 142:79-86(1996).
-!- FUNCTION: Succinyl-CoA synthetase functions in the citric acid cycle
(TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of
either ATP or GTP and thus represents the only step of substrate-level
phosphorylation in the TCA. The beta subunit provides nucleotide
specificity of the enzyme and binds the substrate succinate, while the
binding sites for coenzyme A and phosphate are found in the alpha
subunit. Can also generate UTP or CTP, although it preferentially
synthesizes ATP and/or GTP. {ECO:0000255|HAMAP-Rule:MF_00558,
ECO:0000269|PubMed:10671455}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + CoA + succinate = ADP + phosphate + succinyl-CoA;
Xref=Rhea:RHEA:17661, ChEBI:CHEBI:30031, ChEBI:CHEBI:30616,
ChEBI:CHEBI:43474, ChEBI:CHEBI:57287, ChEBI:CHEBI:57292,
ChEBI:CHEBI:456216; EC=6.2.1.5; Evidence={ECO:0000255|HAMAP-
Rule:MF_00558, ECO:0000269|PubMed:10671455};
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000255|HAMAP-Rule:MF_00558};
Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP-Rule:MF_00558};
-!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle; succinate
from succinyl-CoA (ligase route): step 1/1. {ECO:0000255|HAMAP-
Rule:MF_00558}.
-!- SUBUNIT: Heterotetramer of two alpha and two beta subunits.
{ECO:0000255|HAMAP-Rule:MF_00558}.
-!- SIMILARITY: Belongs to the succinate/malate CoA ligase beta subunit
family. {ECO:0000255|HAMAP-Rule:MF_00558}.
---------------------------------------------------------------------------
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EMBL; AF128399; AAD21622.1; -; Genomic_DNA.
EMBL; AE004091; AAG04977.1; -; Genomic_DNA.
EMBL; X84052; CAA58870.1; -; Genomic_DNA.
PIR; A83446; A83446.
PIR; S54847; S54847.
RefSeq; NP_250279.1; NC_002516.2.
RefSeq; WP_003087425.1; NZ_QZGE01000003.1.
SMR; P53593; -.
PaxDb; P53593; -.
PRIDE; P53593; -.
DNASU; 882016; -.
EnsemblBacteria; AAG04977; AAG04977; PA1588.
GeneID; 882016; -.
KEGG; pae:PA1588; -.
PATRIC; fig|208964.12.peg.1647; -.
PseudoCAP; PA1588; -.
HOGENOM; CLU_037430_0_2_6; -.
InParanoid; P53593; -.
OMA; ITACDEV; -.
PhylomeDB; P53593; -.
BioCyc; PAER208964:G1FZ6-1618-MONOMER; -.
UniPathway; UPA00223; UER00999.
Proteomes; UP000002438; Chromosome.
GO; GO:0005829; C:cytosol; IBA:GO_Central.
GO; GO:0042709; C:succinate-CoA ligase complex; IDA:PseudoCAP.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004550; F:nucleoside diphosphate kinase activity; IDA:PseudoCAP.
GO; GO:0004775; F:succinate-CoA ligase (ADP-forming) activity; IDA:PseudoCAP.
GO; GO:0009142; P:nucleoside triphosphate biosynthetic process; IDA:PseudoCAP.
GO; GO:0046777; P:protein autophosphorylation; IDA:PseudoCAP.
GO; GO:0006104; P:succinyl-CoA metabolic process; IBA:GO_Central.
GO; GO:0006099; P:tricarboxylic acid cycle; IBA:GO_Central.
Gene3D; 3.30.1490.20; -; 1.
Gene3D; 3.40.50.261; -; 1.
HAMAP; MF_00558; Succ_CoA_beta; 1.
InterPro; IPR011761; ATP-grasp.
InterPro; IPR013650; ATP-grasp_succ-CoA_synth-type.
InterPro; IPR013815; ATP_grasp_subdomain_1.
InterPro; IPR005811; CoA_ligase.
InterPro; IPR017866; Succ-CoA_synthase_bsu_CS.
InterPro; IPR005809; Succ_CoA_synthase_bsu.
InterPro; IPR016102; Succinyl-CoA_synth-like.
PANTHER; PTHR11815; PTHR11815; 1.
Pfam; PF08442; ATP-grasp_2; 1.
Pfam; PF00549; Ligase_CoA; 1.
PIRSF; PIRSF001554; SucCS_beta; 1.
SUPFAM; SSF52210; SSF52210; 1.
TIGRFAMs; TIGR01016; sucCoAbeta; 1.
PROSITE; PS50975; ATP_GRASP; 1.
PROSITE; PS01217; SUCCINYL_COA_LIG_3; 1.
1: Evidence at protein level;
ATP-binding; Ligase; Magnesium; Metal-binding; Nucleotide-binding;
Reference proteome; Tricarboxylic acid cycle.
CHAIN 1..388
/note="Succinate--CoA ligase [ADP-forming] subunit beta"
/id="PRO_0000102844"
DOMAIN 9..244
/note="ATP-grasp"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
NP_BIND 53..55
/note="ATP"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
REGION 321..323
/note="Substrate binding; shared with subunit alpha"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
METAL 199
/note="Magnesium"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
METAL 213
/note="Magnesium"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
BINDING 46
/note="ATP"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
BINDING 99
/note="ATP"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
BINDING 102
/note="ATP; via amide nitrogen"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
BINDING 107
/note="ATP"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
BINDING 264
/note="Substrate; shared with subunit alpha"
/evidence="ECO:0000255|HAMAP-Rule:MF_00558"
CONFLICT 239..240
/note="DA -> LP (in Ref. 3)"
/evidence="ECO:0000305"
CONFLICT 364..382
/note="SGLNIIAATSLTDAAQQVV -> KRPEHHRGNQPDRRCPASL (in Ref.
1; AAD21622)"
/evidence="ECO:0000305"
SEQUENCE 388 AA; 41543 MW; B0CC74089FE6C8EF CRC64;
MNLHEYQGKQ LFAEYGLPVS KGFAVDTPEE AAEACDKIGG SEWVVKAQVH AGGRGKAGGV
KLVKSKEDAK AFAQQWLGKN LVTYQTDANG QPVSKILVES CTDIDKELYL GAVVDRSSRR
IVFMASTEGG VDIEKVAHDT PEKILKATID PLVGAQPYQG RELAFQLGLK GDQIKQFTHI
FVGLAKLFQD YDLALLEVNP LVIKKDGNLH CLDAKINIDS NALYRQPKLR AMHDPSQDDA
REAHAQKWEL NYVALEGNIG CMVNGAGLAM GTMDIVNLHG GKPANFLDVG GGATKERVTE
AFKIILSDSN VKAVLVNIFG GIVRCDMIAE GIIGAVKEVG VKVPVVVRLE GNNAELGAKV
LAESGLNIIA ATSLTDAAQQ VVKAAEGK


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WP1106: Keap1-Nrf2
WP1897: Regulation of beta-cell development
WP401: Mitochondrial LC-Fatty Acid Beta-Oxidation
WP930: TGF Beta Signaling Pathway

Related Genes :
[sucC b0728 JW0717] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[SUCLA2] Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (ATP-specific succinyl-CoA synthetase subunit beta) (A-SCS) (Succinyl-CoA synthetase beta-A chain) (SCS-betaA)
[sucD b0729 JW0718] Succinate--CoA ligase [ADP-forming] subunit alpha (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[SUCLG1] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[SUCLG1] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[Suclg1] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[sucC scsB] Succinate--CoA ligase [GDP-forming] subunit beta (EC 6.2.1.4) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[sucC PA1588] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[scsA DDB_G0289325] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) (p36)
[] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[Suclg1] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta); Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]
[acdBI PF1787] Acetate--CoA ligase [ADP-forming] I subunit beta (EC 6.2.1.13) (ADP-forming acetyl coenzyme A synthetase I subunit beta) (ACS I subunit beta)
[Scsalpha1 Scsalpha CG1065] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) (Succinyl-coenzyme A synthetase alpha subunit 1)
[] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta); Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]
[SUCLG1] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) (Fragment)
[tca-9 B9J10.140 NCU08471] Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta)
[SUCLA2 QflA-11886] Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (ATP-specific succinyl-CoA synthetase subunit beta) (A-SCS) (Succinyl-CoA synthetase beta-A chain) (SCS-betaA)
[sucC BSU16090] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[acdAI PF1540] Acetate--CoA ligase [ADP-forming] I subunit alpha (EC 6.2.1.13) (ADP-forming acetyl coenzyme A synthetase I subunit alpha) (ACS I subunit alpha)
[sucD PA1589] Succinate--CoA ligase [ADP-forming] subunit alpha (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[NOO_LOCUS8770] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial (EC 6.2.1.5) (Succinyl-CoA synthetase beta chain) (SCS-beta); Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]
[odhB sucC EPO11_04555] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[sucC sucD HWD61_08285] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta); Succinate--CoA ligase [ADP-forming] subunit alpha (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]
[sucD sucC KL86CIT2_200018] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta); Succinate--CoA ligase [ADP-forming] subunit alpha (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]
[sucC Rv0951 MTCY10D7.23c] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[sucC2 sucC SCO6585 SC8A6.06] Succinate--CoA ligase [ADP-forming] subunit beta 2 (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta 2) (SCS-beta 2)
[] Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (EC 6.2.1.4) (EC 6.2.1.5) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)
[sucC RB10617] Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
[sucC sucD CMG10_01695] Multifunctional fusion protein [Includes: Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta); Succinate--CoA ligase [ADP-forming] subunit alpha (Succinyl-CoA synthetase subunit alpha) (SCS-alpha)]

Bibliography :