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Synaptophysin (Major synaptic vesicle protein p38)

 SYPH_RAT                Reviewed;         307 AA.
P07825; Q499R3;
01-AUG-1988, integrated into UniProtKB/Swiss-Prot.
01-AUG-1988, sequence version 1.
17-JUN-2020, entry version 168.
RecName: Full=Synaptophysin;
AltName: Full=Major synaptic vesicle protein p38;
Name=Syp;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
PubMed=3123215; DOI=10.1002/j.1460-2075.1987.tb02644.x;
Leube R.E., Kaiser P., Seiter A., Zimbelmann R., Franke W.W., Rehm H.,
Knaus P., Prior P., Betz H., Reinke H., Beyreuther K., Wiedenmann B.;
"Synaptophysin: molecular organization and mRNA expression as determined
from cloned cDNA.";
EMBO J. 6:3261-3268(1987).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=3120152; DOI=10.1093/nar/15.22.9607;
Suedhof T.C., Lottspeich F., Greengard P., Mehl E., Jahn R.;
"The cDNA and derived amino acid sequences for rat and human
synaptophysin.";
Nucleic Acids Res. 15:9607-9607(1987).
[3]
NUCLEOTIDE SEQUENCE [MRNA], AND PARTIAL PROTEIN SEQUENCE.
PubMed=3120313; DOI=10.1126/science.3120313;
Suedhof T.C., Lottspeich F., Greengard P., Mehl E., Jahn R.;
"A synaptic vesicle protein with a novel cytoplasmic domain and four
transmembrane regions.";
Science 238:1142-1144(1987).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=1902431; DOI=10.1016/0378-1119(91)90127-w;
Bargou R.C.E.F., Leube R.E.;
"The synaptophysin-encoding gene in rat and man is specifically transcribed
in neuroendocrine cells.";
Gene 99:197-204(1991).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Prostate;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project:
the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 13-307.
TISSUE=Brain;
PubMed=3121632; DOI=10.1083/jcb.105.6.2447;
Buckley K.M., Floor E., Kelly R.B.;
"Cloning and sequence analysis of cDNA encoding p38, a major synaptic
vesicle protein.";
J. Cell Biol. 105:2447-2456(1987).
[7]
INTERACTION WITH SIAH1 AND SIAH2, AND DEGRADATION.
STRAIN=Sprague-Dawley;
PubMed=11786535; DOI=10.1074/jbc.m107857200;
Wheeler T.C., Chin L.-S., Li Y., Roudabush F.L., Li L.;
"Regulation of synaptophysin degradation by mammalian homologues of Seven
in Absentia.";
J. Biol. Chem. 277:10273-10282(2002).
[8]
INTERACTION WITH VAMP2.
PubMed=19196426; DOI=10.1111/j.1471-4159.2008.05849.x;
Ito H., Atsuzawa K., Morishita R., Usuda N., Sudo K., Iwamoto I.,
Mizutani K., Katoh-Semba R., Nozawa Y., Asano T., Nagata K.;
"Sept8 controls the binding of vesicle-associated membrane protein 2 to
synaptophysin.";
J. Neurochem. 108:867-880(2009).
[9]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-75, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22673903; DOI=10.1038/ncomms1871;
Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C.,
Olsen J.V.;
"Quantitative maps of protein phosphorylation sites across 14 different rat
organs and tissues.";
Nat. Commun. 3:876-876(2012).
-!- FUNCTION: Possibly involved in structural functions as organizing other
membrane components or in targeting the vesicles to the plasma
membrane. Involved in the regulation of short-term and long-term
synaptic plasticity (By similarity). {ECO:0000250}.
-!- SUBUNIT: Homohexamer or homotetramer. Interacts with SRCIN1 (By
similarity). Interacts with VAMP2; the interaction is inhibit by
interaction of VAPM2 with SEPT8 (PubMed:19196426).
{ECO:0000250|UniProtKB:P08247, ECO:0000269|PubMed:19196426}.
-!- INTERACTION:
P07825; P33535: Oprm1; NbExp=8; IntAct=EBI-976085, EBI-4392569;
P07825; Q9QWI6-2: Srcin1; Xeno; NbExp=2; IntAct=EBI-976085, EBI-775607;
-!- SUBCELLULAR LOCATION: Cytoplasmic vesicle, secretory vesicle, synaptic
vesicle membrane {ECO:0000250|UniProtKB:Q62277}; Multi-pass membrane
protein {ECO:0000255}. Cell junction, synapse, synaptosome
{ECO:0000250|UniProtKB:P08247}.
-!- TISSUE SPECIFICITY: Expressed in the brain with expression in the
cerebrum and the cerebellum. {ECO:0000269|PubMed:3123215}.
-!- DEVELOPMENTAL STAGE: Expressed in the spinal cord of newborn animals.
{ECO:0000269|PubMed:3123215}.
-!- DOMAIN: The calcium-binding activity is thought to be localized in the
cytoplasmic tail of the protein.
-!- PTM: Ubiquitinated; mediated by SIAH1 or SIAH2 and leading to its
subsequent proteasomal degradation.
-!- SIMILARITY: Belongs to the synaptophysin/synaptobrevin family.
{ECO:0000305}.
---------------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; X06177; CAA29543.1; -; mRNA.
EMBL; X06388; CAA29685.1; -; mRNA.
EMBL; M58396; AAA42196.1; -; Genomic_DNA.
EMBL; M58402; AAA42196.1; JOINED; Genomic_DNA.
EMBL; M58401; AAA42196.1; JOINED; Genomic_DNA.
EMBL; M58399; AAA42196.1; JOINED; Genomic_DNA.
EMBL; BC099798; AAH99798.1; -; mRNA.
EMBL; X06655; CAA29854.1; -; mRNA.
PIR; JU0464; B27287.
RefSeq; NP_036796.1; NM_012664.3.
BioGRID; 246927; 7.
IntAct; P07825; 13.
MINT; P07825; -.
STRING; 10116.ENSRNOP00000013724; -.
iPTMnet; P07825; -.
PhosphoSitePlus; P07825; -.
jPOST; P07825; -.
PaxDb; P07825; -.
PRIDE; P07825; -.
GeneID; 24804; -.
KEGG; rno:24804; -.
UCSC; RGD:3802; rat.
CTD; 6855; -.
RGD; 3802; Syp.
eggNOG; ENOG410IDYC; Eukaryota.
eggNOG; ENOG4111J4N; LUCA.
InParanoid; P07825; -.
OrthoDB; 1446480at2759; -.
PhylomeDB; P07825; -.
PRO; PR:P07825; -.
Proteomes; UP000002494; Unplaced.
GO; GO:0060076; C:excitatory synapse; IDA:BHF-UCL.
GO; GO:0030285; C:integral component of synaptic vesicle membrane; IDA:SynGO.
GO; GO:0043229; C:intracellular organelle; IDA:RGD.
GO; GO:0016020; C:membrane; ISO:RGD.
GO; GO:0031594; C:neuromuscular junction; ISO:RGD.
GO; GO:0043005; C:neuron projection; IDA:RGD.
GO; GO:0044306; C:neuron projection terminus; IDA:RGD.
GO; GO:0044309; C:neuron spine; IDA:UniProtKB.
GO; GO:0048471; C:perinuclear region of cytoplasm; ISO:RGD.
GO; GO:0014069; C:postsynaptic density; IDA:UniProtKB.
GO; GO:0048786; C:presynaptic active zone; IDA:MGI.
GO; GO:0042734; C:presynaptic membrane; ISO:RGD.
GO; GO:0032991; C:protein-containing complex; IDA:RGD.
GO; GO:0098685; C:Schaffer collateral - CA1 synapse; ISO:RGD.
GO; GO:0045202; C:synapse; ISO:RGD.
GO; GO:0008021; C:synaptic vesicle; IDA:ParkinsonsUK-UCL.
GO; GO:0030672; C:synaptic vesicle membrane; IDA:CAFA.
GO; GO:0043195; C:terminal bouton; HDA:ParkinsonsUK-UCL.
GO; GO:0015485; F:cholesterol binding; ISO:RGD.
GO; GO:0042802; F:identical protein binding; ISO:RGD.
GO; GO:0019904; F:protein domain specific binding; IPI:RGD.
GO; GO:0044877; F:protein-containing complex binding; IPI:RGD.
GO; GO:0042169; F:SH2 domain binding; ISO:RGD.
GO; GO:0000149; F:SNARE binding; IPI:UniProtKB.
GO; GO:0017075; F:syntaxin-1 binding; IDA:MGI.
GO; GO:0071310; P:cellular response to organic substance; ISO:RGD.
GO; GO:0006897; P:endocytosis; IMP:UniProtKB.
GO; GO:0048169; P:regulation of long-term neuronal synaptic plasticity; ISO:RGD.
GO; GO:0048168; P:regulation of neuronal synaptic plasticity; IBA:GO_Central.
GO; GO:2000474; P:regulation of opioid receptor signaling pathway; IDA:UniProtKB.
GO; GO:0048172; P:regulation of short-term neuronal synaptic plasticity; ISO:RGD.
GO; GO:2000300; P:regulation of synaptic vesicle exocytosis; ISO:RGD.
GO; GO:1904645; P:response to amyloid-beta; IEP:RGD.
GO; GO:0048488; P:synaptic vesicle endocytosis; ISO:RGD.
InterPro; IPR008253; Marvel.
InterPro; IPR001285; Synaptophysin/porin.
InterPro; IPR028714; SYP.
PANTHER; PTHR10306; PTHR10306; 1.
PANTHER; PTHR10306:SF10; PTHR10306:SF10; 1.
Pfam; PF01284; MARVEL; 1.
PRINTS; PR00220; SYNAPTOPHYSN.
PROSITE; PS51225; MARVEL; 1.
PROSITE; PS00604; SYNAPTOP; 1.
1: Evidence at protein level;
Calcium; Cell junction; Cytoplasmic vesicle; Direct protein sequencing;
Glycoprotein; Membrane; Phosphoprotein; Reference proteome; Repeat;
Synapse; Synaptosome; Transmembrane; Transmembrane helix; Ubl conjugation.
CHAIN 1..307
/note="Synaptophysin"
/id="PRO_0000179163"
TOPO_DOM 1..19
/note="Cytoplasmic"
/evidence="ECO:0000255"
TRANSMEM 20..43
/note="Helical"
/evidence="ECO:0000255"
TOPO_DOM 44..101
/note="Vesicular"
/evidence="ECO:0000255"
TRANSMEM 102..125
/note="Helical"
/evidence="ECO:0000255"
TOPO_DOM 126..132
/note="Cytoplasmic"
/evidence="ECO:0000255"
TRANSMEM 133..156
/note="Helical"
/evidence="ECO:0000255"
TOPO_DOM 157..194
/note="Vesicular"
/evidence="ECO:0000255"
TRANSMEM 195..218
/note="Helical"
/evidence="ECO:0000255"
TOPO_DOM 219..307
/note="Cytoplasmic"
/evidence="ECO:0000255"
DOMAIN 15..222
/note="MARVEL"
/evidence="ECO:0000255|PROSITE-ProRule:PRU00581"
REGION 249..298
/note="Repeats, Gly-rich"
MOD_RES 75
/note="Phosphotyrosine"
/evidence="ECO:0000244|PubMed:22673903"
MOD_RES 221
/note="Phosphothreonine"
/evidence="ECO:0000255"
MOD_RES 273
/note="Phosphotyrosine"
/evidence="ECO:0000255"
MOD_RES 289
/note="Phosphotyrosine"
/evidence="ECO:0000255"
CARBOHYD 53
/note="N-linked (GlcNAc...) asparagine"
/evidence="ECO:0000255"
SEQUENCE 307 AA; 33311 MW; A245E4F70BF0EAF0 CRC64;
MDVVNQLVAG GQFRVVKEPL GFVKVLQWVF AIFAFATCGS YTGELRLSVE CANKTESALN
IEVEFEYPFR LHQVYFDAPS CVKGGTTKIF LVGDYSSSAE FFVTVAVFAF LYSMGALATY
IFLQNKYREN NKGPMMDFLA TAVFAFMWLV SSSAWAKGLS DVKMATDPEN IIKEMPMCRQ
TGNTCKELRD PVTSGLNTSV VFGFLNLVLW VGNLWFVFKE TGWAAPFMRA PPGAPEKQPA
PGDAYGDAGY GQGPGGYGPQ DSYGPQGGYQ PDYGQPASGG GGYGPQGDYG QQGYGQQGAP
TSFSNQM


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WP2267: Synaptic Vesicle Pathway
WP2292: Chemokine signaling pathway
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WP1659: Glycine, serine and threonine metabolism
WP1665: Limonene and pinene degradation
WP2371: Parkinsons Disease Pathway
WP1438: Influenza A virus infection
WP1888: Post-translational protein modification
WP1531: Vitamin D synthesis
WP1924: Synaptic Transmission
WP1675: Nitrogen metabolism
WP525: Mitochondrial Unfolded-Protein Response
WP1685: Peptidoglycan biosynthesis
WP813: G Protein Signaling Pathways
WP1616: ABC transporters
WP210: Cytoplasmic Ribosomal Proteins
WP1644: DNA replication
WP2203: TSLP Signaling Pathway
WP1692: Protein export
WP1700: Selenoamino acid metabolism
WP1657: Glycerolipid metabolism
WP2272: Pathogenic Escherichia coli infection
WP1663: Homologous recombination
WP2324: AGE/RAGE pathway

Related Genes :
[Syp] Synaptophysin (Major synaptic vesicle protein p38)
[SYP] Synaptophysin (Major synaptic vesicle protein p38)
[Syp] Synaptophysin (BM89 antigen) (Major synaptic vesicle protein p38)
[SYP] Synaptophysin (Major synaptic vesicle protein p38)
[MAPK14 CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Cytokine suppressive anti-inflammatory drug-binding protein) (CSAID-binding protein) (CSBP) (MAP kinase MXI2) (MAX-interacting protein 2) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Stress-activated protein kinase 2a) (SAPK2a)
[Mapk14 Crk1 Csbp1 Csbp2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (CRK1) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[Mapk14 Csbp1 Csbp2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (CRK1) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[MAPK12 ERK6 SAPK3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[Mapk12 Sapk3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[Mapk12 Sapk3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[MAPK11 PRKM11 SAPK2 SAPK2B] Mitogen-activated protein kinase 11 (MAP kinase 11) (MAPK 11) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 beta) (MAP kinase p38 beta) (p38b) (Stress-activated protein kinase 2b) (SAPK2b) (p38-2)
[Mapk11 Prkm11] Mitogen-activated protein kinase 11 (MAP kinase 11) (MAPK 11) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 beta) (MAP kinase p38 beta) (p38B)
[MAPK14 CSBP1 CSBP2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[MAPK13 PRKM13 SAPK4] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[Mapk13 Serk4] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[Mapk13] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[p38b CG7393] Mitogen-activated protein kinase p38b (MAP kinase p38b) (MAPK p38b) (EC 2.7.11.24)
[pmk-1 B0218.3] Mitogen-activated protein kinase pmk-1 (EC 2.7.11.24) (Stress-activated protein kinase pmk-1) (p38 MAP kinase 1)
[pstS1 phoS1 Rv0934 MTCY08D9.05c] Phosphate-binding protein PstS 1 (PBP 1) (PhoS1) (PstS-1) (38-kDa glycolipoprotein) (38-kDa lipoprotein) (P38) (Antigen Ag78) (Protein antigen B) (Pab)
[mapk14a mapk14] Mitogen-activated protein kinase 14A (MAP kinase 14A) (MAPK 14A) (EC 2.7.11.24) (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (zp38a)
[pmk-3 F42G8.4] Mitogen-activated protein kinase pmk-3 (EC 2.7.11.24) (Stress-activated protein kinase pmk-3) (p38 MAP kinase 3)
[mapk14b mapk14] Mitogen-activated protein kinase 14B (MAP kinase 14B) (MAPK 14B) (EC 2.7.11.24) (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (zp38b)
[AIMP2 JTV1 PRO0992] Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (Multisynthase complex auxiliary component p38) (Protein JTV-1)
[mapk14a] Mitogen-activated protein kinase 14A (MAP kinase 14A) (MAPK 14A) (EC 2.7.11.24) (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (cp38a)
[mapk14b] Mitogen-activated protein kinase 14B (MAP kinase 14B) (MAPK 14B) (EC 2.7.11.24) (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (cp38b)
[MAPK14 CSBP1] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Stress-activated protein kinase 2a)
[Sv2a Sv2] Synaptic vesicle glycoprotein 2A (Synaptic vesicle protein 2) (Synaptic vesicle protein 2A)
[MAPKAPK5 PRAK] MAP kinase-activated protein kinase 5 (MAPK-activated protein kinase 5) (MAPKAP kinase 5) (MAPKAP-K5) (MAPKAPK-5) (MK-5) (MK5) (EC 2.7.11.1) (p38-regulated/activated protein kinase) (PRAK)
[S Large S P PreS1 preS1 PreS1-S preS1-S preS2] Large envelope protein (L glycoprotein) (L-HBsAg) (LHB) (Large S protein) (Large surface protein) (Major surface antigen)
[Sv2a Kiaa0736 Sv2] Synaptic vesicle glycoprotein 2A (Synaptic vesicle protein 2) (Synaptic vesicle protein 2A) (Calcium regulator SV2A)

Bibliography :
[31098770] Decreased Expression of Synaptophysin 1 (SYP1 Major Synaptic Vesicle Protein p38) and Contactin 6 (CNTN6/NB3) in the Cerebellar Vermis of reln Haplodeficient Mice.
[10936189] The GLT-1 and GLAST glutamate transporters are expressed on morphologically distinct astrocytes and regulated by neuronal activity in primary hippocampal cocultures.
[7823159] Overexpression of synaptophysin enhances neurotransmitter secretion at Xenopus neuromuscular synapses.
[8213090] Distinct neuronal subset reveals perikaryal immunostaining for synaptophysin (protein p38) in the striatum of rats.
[2165811] Identification and localization of low-molecular-mass GTP-binding proteins associated with synaptic vesicles and other membranes.
[1695724] Synaptophysin: a substrate for the protein tyrosine kinase pp60c-src in intact synaptic vesicles.
[2307706] Sorting during transport to the surface of PC12 cells: divergence of synaptic vesicle and secretory granule proteins.
[2513331] Microvesicles of the neurohypophysis are biochemically related to small synaptic vesicles of presynaptic nerve terminals.
[3130468] The synaptic vesicle proteins synapsin I and synaptophysin (protein P38) are concentrated both in efferent and afferent nerve endings of the skeletal muscle.
[3129538] Identification and characterization of the major proteins of mammalian brain synaptic vesicles.