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Transcription factor SPT20 homolog (p38-interacting protein) (p38IP)

 SP20H_MOUSE             Reviewed;         530 AA.
Q7TT00; Q8BG53; Q9JLS9;
19-JUL-2005, integrated into UniProtKB/Swiss-Prot.
01-OCT-2003, sequence version 1.
17-JUN-2020, entry version 112.
RecName: Full=Transcription factor SPT20 homolog;
AltName: Full=p38-interacting protein;
Short=p38IP;
Name=Supt20h; Synonyms=D3Ertd300e, Fam48a, Supt20;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), FUNCTION, TISSUE SPECIFICITY,
DISRUPTION PHENOTYPE, AND INTERACTION WITH MAPK14.
PubMed=16751104; DOI=10.1016/j.cell.2006.03.048;
Zohn I.E., Li Y., Skolnik E.Y., Anderson K.V., Han J., Niswander L.;
"p38 and a p38-interacting protein are critical for downregulation of E-
cadherin during mouse gastrulation.";
Cell 125:957-969(2006).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
STRAIN=C57BL/6J; TISSUE=Thymus;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Brain;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project:
the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=17242355; DOI=10.1073/pnas.0609836104;
Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P.;
"Large-scale phosphorylation analysis of mouse liver.";
Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007).
[5]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-296 AND SER-520, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, Kidney, Lung, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Required for MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or
MAPK14) activation during gastrulation. Required for down-regulation of
E-cadherin during gastrulation by regulating E-cadherin protein level
downstream from NCK-interacting kinase (NIK) and independently of the
regulation of transcription by FGF signaling and Snail. Required for
starvation-induced ATG9A trafficking during autophagy.
{ECO:0000269|PubMed:16751104}.
-!- SUBUNIT: Interacts with ATG9A (By similarity). Interacts with MAPK14.
{ECO:0000250, ECO:0000269|PubMed:16751104}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q7TT00-1; Sequence=Displayed;
Name=2;
IsoId=Q7TT00-2; Sequence=VSP_014880;
Name=3;
IsoId=Q7TT00-3; Sequence=VSP_014881, VSP_014882;
-!- TISSUE SPECIFICITY: Ubiquitously expressed throughout development.
{ECO:0000269|PubMed:16751104}.
-!- DISRUPTION PHENOTYPE: Mice show gastrulation defects in which mesoderm
migration is defective due to deficiency in E-cadherin protein down-
regulation in the primitive streak. A weaker mutation named droopy eye
(drey), which affects splicing causes incompletely penetrant defects in
neural tube closure, eye development and gastrulation.
{ECO:0000269|PubMed:16751104}.
-!- SIMILARITY: Belongs to the SPT20 family. {ECO:0000305}.
---------------------------------------------------------------------------
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EMBL; AF139179; AAF61447.1; -; mRNA.
EMBL; AK050619; BAC34346.1; -; mRNA.
EMBL; AK083379; BAC38893.1; -; mRNA.
EMBL; BC052702; AAH52702.1; -; mRNA.
CCDS; CCDS38431.1; -. [Q7TT00-2]
RefSeq; NP_064379.1; NM_019995.3. [Q7TT00-2]
BioGRID; 208175; 1.
ComplexPortal; CPX-920; SAGA complex.
IntAct; Q7TT00; 1.
STRING; 10090.ENSMUSP00000131454; -.
iPTMnet; Q7TT00; -.
PhosphoSitePlus; Q7TT00; -.
EPD; Q7TT00; -.
PaxDb; Q7TT00; -.
PeptideAtlas; Q7TT00; -.
PRIDE; Q7TT00; -.
Antibodypedia; 49228; 74 antibodies.
Ensembl; ENSMUST00000170552; ENSMUSP00000131454; ENSMUSG00000027751. [Q7TT00-2]
Ensembl; ENSMUST00000200439; ENSMUSP00000143059; ENSMUSG00000027751. [Q7TT00-1]
GeneID; 56790; -.
KEGG; mmu:56790; -.
UCSC; uc008pfk.1; mouse. [Q7TT00-3]
UCSC; uc008pfl.1; mouse. [Q7TT00-2]
CTD; 56790; -.
MGI; MGI:1929651; Supt20.
eggNOG; ENOG410IJ9A; Eukaryota.
eggNOG; ENOG410YRYS; LUCA.
GeneTree; ENSGT00390000013549; -.
HOGENOM; CLU_020200_2_0_1; -.
InParanoid; Q7TT00; -.
KO; K21245; -.
OrthoDB; 369747at2759; -.
PhylomeDB; Q7TT00; -.
TreeFam; TF329155; -.
BioGRID-ORCS; 56790; 4 hits in 13 CRISPR screens.
ChiTaRS; Supt20; mouse.
PRO; PR:Q7TT00; -.
Proteomes; UP000000589; Chromosome 3.
RNAct; Q7TT00; protein.
Bgee; ENSMUSG00000027751; Expressed in testis and 272 other tissues.
Genevisible; Q7TT00; MM.
GO; GO:0000124; C:SAGA complex; IBA:GO_Central.
GO; GO:0003712; F:transcription coregulator activity; IEA:InterPro.
GO; GO:0007369; P:gastrulation; IEA:UniProtKB-KW.
GO; GO:0045722; P:positive regulation of gluconeogenesis; IGI:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IGI:MGI.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
InterPro; IPR021950; Spt20.
PANTHER; PTHR13526; PTHR13526; 1.
Pfam; PF12090; Spt20; 2.
1: Evidence at protein level;
Alternative splicing; Developmental protein; Gastrulation; Phosphoprotein;
Reference proteome.
CHAIN 1..530
/note="Transcription factor SPT20 homolog"
/id="PRO_0000187040"
MOD_RES 296
/note="Phosphoserine"
/evidence="ECO:0000244|PubMed:21183079"
MOD_RES 491
/note="Phosphothreonine"
/evidence="ECO:0000250|UniProtKB:Q8NEM7"
MOD_RES 515
/note="Phosphoserine"
/evidence="ECO:0000250|UniProtKB:Q8NEM7"
MOD_RES 520
/note="Phosphoserine"
/evidence="ECO:0000244|PubMed:21183079"
VAR_SEQ 55
/note="K -> KQ (in isoform 2)"
/evidence="ECO:0000303|PubMed:16751104"
/id="VSP_014880"
VAR_SEQ 384
/note="H -> Q (in isoform 3)"
/evidence="ECO:0000303|PubMed:16141072"
/id="VSP_014881"
VAR_SEQ 385..530
/note="Missing (in isoform 3)"
/evidence="ECO:0000303|PubMed:16141072"
/id="VSP_014882"
SEQUENCE 530 AA; 59519 MW; 44CCC752310C0F5D CRC64;
MQQAVEQALD CAEYIVESAQ QRPPKRKYLS SGRKSIFQKL YDLYVEECEK EPEVKKLRRN
VNLLEKLVMQ ETLSCLVVNL YPGNEGYSLM LRGKNGSDSE TIRLPYEEGE LLEYLDAEEL
PPILVDLLEK SQVNIFHCGC VIAEIRDYRQ SSNMKSPGYQ SRHILLRPTM QTLVCDVHSI
TSDNHKWTQE DKLLLESQLI LATAEPLCLD PSVAVACTAN RLLYNRQKMN TRPMKRCWKR
YSRSSLNRQQ DLSHGPPPPQ LRLLDFLQKR KERKAGQHYD LKISKAGNCV DMWKRSPCNL
AVPSEVDVEK YAKVEESIKS DDSQPTMWPA HDVKDDYVFE CEGGNQYQKT KLTILQSLGD
PLYYGKIQPW KADEENDSQM SPSHSSADDH SNWFVIGSKT DAERVVNQYQ ELVQNEAKCP
VKMSHSSSGS AALSPGEEAE QAETSSIQSS VLGKGVKHRP PPIKLPSGSG NSSSGNYFTA
QQASSFLKSP TPPPSCKPSL SRKSSVDLSQ VSMLSPAALS PASSSQRHES


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Related Genes :
[SUPT20H C13orf19 FAM48A FP757] Transcription factor SPT20 homolog (p38-interacting protein) (p38IP)
[Supt20h D3Ertd300e Fam48a Supt20] Transcription factor SPT20 homolog (p38-interacting protein) (p38IP)
[MAPK14 CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Cytokine suppressive anti-inflammatory drug-binding protein) (CSAID-binding protein) (CSBP) (MAP kinase MXI2) (MAX-interacting protein 2) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Stress-activated protein kinase 2a) (SAPK2a)
[SPT20 ADA5 YOL148C] Transcription factor SPT20
[AIMP2 JTV1 PRO0992] Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (Multisynthase complex auxiliary component p38) (Protein JTV-1)
[Mapk14 Crk1 Csbp1 Csbp2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (CRK1) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[pmk-1 B0218.3] Mitogen-activated protein kinase pmk-1 (EC 2.7.11.24) (Stress-activated protein kinase pmk-1) (p38 MAP kinase 1)
[MAPK12 ERK6 SAPK3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[MAPK11 PRKM11 SAPK2 SAPK2B] Mitogen-activated protein kinase 11 (MAP kinase 11) (MAPK 11) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 beta) (MAP kinase p38 beta) (p38b) (Stress-activated protein kinase 2b) (SAPK2b) (p38-2)
[Mapk14 Csbp1 Csbp2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (CRK1) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[Mapk11 Prkm11] Mitogen-activated protein kinase 11 (MAP kinase 11) (MAPK 11) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 beta) (MAP kinase p38 beta) (p38B)
[MAPK14 CSBP1 CSBP2] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha)
[MAPK13 PRKM13 SAPK4] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[Mapk13 Serk4] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[pmh1 mcr1 tfb3 SPBC776.18c] RNA polymerase II transcription factor B subunit 3 (CDK-activating kinase assembly factor MAT1 homolog) (RING finger protein pmh1) (RNA polymerase II transcription factor B 38 kDa subunit) (RNA polymerase II transcription factor B p38 subunit)
[p38b CG7393] Mitogen-activated protein kinase p38b (MAP kinase p38b) (MAPK p38b) (EC 2.7.11.24)
[Mapk12 Sapk3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[Mapk12 Sapk3] Mitogen-activated protein kinase 12 (MAP kinase 12) (MAPK 12) (EC 2.7.11.24) (Extracellular signal-regulated kinase 6) (ERK-6) (Mitogen-activated protein kinase p38 gamma) (MAP kinase p38 gamma) (Stress-activated protein kinase 3)
[Mapk13] Mitogen-activated protein kinase 13 (MAP kinase 13) (MAPK 13) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) (Stress-activated protein kinase 4)
[PA2G4 EBP1] Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4-1) (ErbB3-binding protein 1)
[Pa2g4 Ebp1 Plfap] Proliferation-associated protein 2G4 (IRES-specific cellular trans-acting factor 45 kDa) (ITAF45) (Mpp1) (Proliferation-associated protein 1) (Protein p38-2G4)
[mapk14a mapk14] Mitogen-activated protein kinase 14A (MAP kinase 14A) (MAPK 14A) (EC 2.7.11.24) (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (zp38a)
[mapk14b mapk14] Mitogen-activated protein kinase 14B (MAP kinase 14B) (MAPK 14B) (EC 2.7.11.24) (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (zp38b)
[pstS1 phoS1 Rv0934 MTCY08D9.05c] Phosphate-binding protein PstS 1 (PBP 1) (PhoS1) (PstS-1) (38-kDa glycolipoprotein) (38-kDa lipoprotein) (P38) (Antigen Ag78) (Protein antigen B) (Pab)
[DAB2IP AF9Q34 AIP1 KIAA1743] Disabled homolog 2-interacting protein (DAB2 interaction protein) (DAB2-interacting protein) (ASK-interacting protein 1) (AIP-1) (DOC-2/DAB-2 interactive protein)
[MAPK14 CSBP1] Mitogen-activated protein kinase 14 (MAP kinase 14) (MAPK 14) (EC 2.7.11.24) (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Stress-activated protein kinase 2a)
[mapk14a] Mitogen-activated protein kinase 14A (MAP kinase 14A) (MAPK 14A) (EC 2.7.11.24) (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (cp38a)
[mapk14b] Mitogen-activated protein kinase 14B (MAP kinase 14B) (MAPK 14B) (EC 2.7.11.24) (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (cp38b)
[pmk-3 F42G8.4] Mitogen-activated protein kinase pmk-3 (EC 2.7.11.24) (Stress-activated protein kinase pmk-3) (p38 MAP kinase 3)
[Syp] Synaptophysin (Major synaptic vesicle protein p38)

Bibliography :