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Trihelix transcription factor PTL (Trihelix DNA-binding protein PETAL LOSS)

 PTL_ARATH               Reviewed;         591 AA.
Q9LZS0; Q6Q6T0;
06-MAR-2013, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
13-FEB-2019, entry version 116.
RecName: Full=Trihelix transcription factor PTL;
AltName: Full=Trihelix DNA-binding protein PETAL LOSS;
Name=PTL; OrderedLocusNames=At5g03680; ORFNames=F17C15.100;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE, TISSUE
SPECIFICITY, DEVELOPMENTAL STAGE, AND INDUCTION BY PINOID.
STRAIN=cv. C24, cv. Columbia, and cv. Landsberg erecta; TISSUE=Flower;
PubMed=15269176; DOI=10.1242/dev.01279;
Brewer P.B., Howles P.A., Dorian K., Griffith M.E., Ishida T.,
Kaplan-Levy R.N., Kilinc A., Smyth D.R.;
"PETAL LOSS, a trihelix transcription factor gene, regulates perianth
architecture in the Arabidopsis flower.";
Development 131:4035-4045(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
FUNCTION, AND DISRUPTION PHENOTYPE.
STRAIN=cv. C24, and cv. Columbia;
PubMed=10572040;
Griffith M.E., da Silva Conceicao A., Smyth D.R.;
"PETAL LOSS gene regulates initiation and orientation of second whorl
organs in the Arabidopsis flower.";
Development 126:5635-5644(1999).
[5]
FUNCTION.
STRAIN=cv. Columbia;
PubMed=18080804; DOI=10.1007/s11103-007-9272-6;
Li X., Qin G., Chen Z., Gu H., Qu L.-J.;
"A gain-of-function mutation of transcriptional factor PTL results in
curly leaves, dwarfism and male sterility by affecting auxin
homeostasis.";
Plant Mol. Biol. 66:315-327(2008).
[6]
INTERACTION WITH KIN10, AND TISSUE SPECIFICITY.
PubMed=25697797; DOI=10.1093/jxb/erv032;
O'Brien M., Kaplan-Levy R.N., Quon T., Sappl P.G., Smyth D.R.;
"PETAL LOSS, a trihelix transcription factor that represses growth in
Arabidopsis thaliana, binds the energy-sensing SnRK1 kinase AKIN10.";
J. Exp. Bot. 66:2475-2485(2015).
-!- FUNCTION: Transcription factor that prevents growth. Regulates
perianth architecture in flower, mostly in the second whorl,
probably by suppressing growth between initiating sepals, ensuring
that they remain separate, and by modulating organ shapes.
Required for the establishment of auxin flux.
{ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176,
ECO:0000269|PubMed:18080804}.
-!- SUBUNIT: Interacts with KIN10. {ECO:0000269|PubMed:25697797}.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Confined to flowers, at low levels. Also
present in 7-days-old seedlings. Barely detectable in other
tissues such as young seedlings, roots, stems, leaves and siliques
(PubMed:15269176). Expressed in flower primordia, more precisely
between newly arisen sepal primordia and also at the basal margins
of developing sepals (PubMed:25697797).
{ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
-!- DEVELOPMENTAL STAGE: First observed in the early-developing
flower, in four zones between the initiating sepals and in their
developing margins. Later detected in the margins of expanding
sepals, petals and stamens, and in the leaf margins.
{ECO:0000269|PubMed:15269176}.
-!- INDUCTION: Expression within the newly arising sepals is repressed
via the PINOID auxin-response pathway.
{ECO:0000269|PubMed:15269176}.
-!- DISRUPTION PHENOTYPE: Disrupted perianth development, particularly
petal initiation and orientation, sometimes leading to petal
fusion. {ECO:0000269|PubMed:10572040,
ECO:0000269|PubMed:15269176}.
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EMBL; AY555728; AAS64746.1; -; mRNA.
EMBL; AL162506; CAB82933.1; -; Genomic_DNA.
EMBL; CP002688; AED90641.1; -; Genomic_DNA.
PIR; T48395; T48395.
RefSeq; NP_195988.1; NM_120449.3.
UniGene; At.50425; -.
ProteinModelPortal; Q9LZS0; -.
SMR; Q9LZS0; -.
BioGrid; 17033; 3.
STRING; 3702.AT5G03680.1; -.
PaxDb; Q9LZS0; -.
EnsemblPlants; AT5G03680.1; AT5G03680.1; AT5G03680.
GeneID; 831757; -.
Gramene; AT5G03680.1; AT5G03680.1; AT5G03680.
KEGG; ath:AT5G03680; -.
Araport; AT5G03680; -.
TAIR; locus:2144553; AT5G03680.
eggNOG; KOG4282; Eukaryota.
eggNOG; ENOG410YYXY; LUCA.
HOGENOM; HOG000006038; -.
InParanoid; Q9LZS0; -.
OMA; IDKEHLF; -.
OrthoDB; 639980at2759; -.
PhylomeDB; Q9LZS0; -.
PRO; PR:Q9LZS0; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9LZS0; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IDA:TAIR.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0019900; F:kinase binding; IPI:UniProtKB.
GO; GO:0042803; F:protein homodimerization activity; IDA:TAIR.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0048498; P:establishment of petal orientation; IMP:TAIR.
GO; GO:0046621; P:negative regulation of organ growth; IMP:TAIR.
GO; GO:0090428; P:perianth development; IMP:TAIR.
GO; GO:0048441; P:petal development; IMP:TAIR.
GO; GO:0009909; P:regulation of flower development; IMP:TAIR.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0010200; P:response to chitin; IEP:TAIR.
GO; GO:0048442; P:sepal development; IGI:TAIR.
InterPro; IPR017877; Myb-like_dom.
PROSITE; PS50090; MYB_LIKE; 2.
1: Evidence at protein level;
Complete proteome; Developmental protein; DNA-binding;
Growth regulation; Nucleus; Reference proteome; Repeat; Transcription;
Transcription regulation.
CHAIN 1 591 Trihelix transcription factor PTL.
/FTId=PRO_0000421377.
DOMAIN 118 177 Myb-like 1. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
DOMAIN 422 479 Myb-like 2. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
CONFLICT 459 459 A -> V (in Ref. 1; AAS64746).
{ECO:0000305}.
SEQUENCE 591 AA; 66639 MW; A9DB191A51128848 CRC64;
MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD
QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF LDGGGFGSGV GGDGGGTGRW
PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY
RKTKEGKAGR QDGKHYRFFR QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT
TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD
VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ NENGSDQTMT NNVCVKGSSS
CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW
ISNGMRKEKK QINKKRKDNS SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS
TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q


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Pathways :
WP1531: Vitamin D synthesis
WP1616: ABC transporters
WP1789: Binding of RNA by Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs)
WP1899: Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs)
WP2292: Chemokine signaling pathway
WP731: Sterol regulatory element binding protein related
WP1046: Signaling of Hepatocyte Growth Factor Receptor
WP1049: G Protein Signaling Pathways
WP1066: Eukaryotic Transcription Initiation
WP1162: Signaling of Hepatocyte Growth Factor Receptor
WP1165: G Protein Signaling Pathways
WP1182: Eukaryotic Transcription Initiation
WP1206: Signaling of Hepatocyte Growth Factor Receptor
WP1235: Signaling of Hepatocyte Growth Factor Receptor
WP1238: Eukaryotic Transcription Initiation
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1502: Mitochondrial biogenesis
WP1541: Energy Metabolism
WP1566: Citrate cycle (TCA cycle)
WP1613: 1,4-Dichlorobenzene degradation
WP1624: Bacterial secretion system
WP1625: Base excision repair
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Related Genes :
[KIN10 AK21 AKIN10 SKIN10 SNR2 SNRK1.1 At3g01090 T4P13.22] SNF1-related protein kinase catalytic subunit alpha KIN10 (AKIN10) (EC 2.7.11.1) (AKIN alpha-2) (AKINalpha2) (SNF1-related kinase 1.1) (SnRK1.1)
[YBX1 NSEP1 YB1] Nuclease-sensitive element-binding protein 1 (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Y-box transcription factor) (Y-box-binding protein 1) (YB-1)
[PTF1A BHLHA29 PTF1P48] Pancreas transcription factor 1 subunit alpha (Class A basic helix-loop-helix protein 29) (bHLHa29) (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[Gata1 Gf-1] Erythroid transcription factor (Eryf1) (GATA-binding factor 1) (GATA-1) (GF-1) (NF-E1 DNA-binding protein)
[ANT CKC1 DRG OVM At4g37750 T28I19.30] AP2-like ethylene-responsive transcription factor ANT (Complementing a protein kinase C mutant protein 1) (Protein AINTEGUMENTA) (Protein DRAGON) (Protein OVULE MUTANT)
[GATA1 ERYF1 GF1] Erythroid transcription factor (Eryf1) (GATA-binding factor 1) (GATA-1) (GF-1) (NF-E1 DNA-binding protein)
[RUNX1 AML1 CBFA2] Runt-related transcription factor 1 (Acute myeloid leukemia 1 protein) (Core-binding factor subunit alpha-2) (CBF-alpha-2) (Oncogene AML-1) (Polyomavirus enhancer-binding protein 2 alpha B subunit) (PEA2-alpha B) (PEBP2-alpha B) (SL3-3 enhancer factor 1 alpha B subunit) (SL3/AKV core-binding factor alpha B subunit)
[Tcf12 Alf1 Meb] Transcription factor 12 (TCF-12) (Class A helix-loop-helix transcription factor ME1) (DNA-binding protein HTF4) (E-box-binding protein) (Transcription factor HTF-4)
[Ptf1a Ptf1p48] Pancreas transcription factor 1 subunit alpha (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[TCF3 BHLHB21 E2A ITF1] Transcription factor E2-alpha (Class B basic helix-loop-helix protein 21) (bHLHb21) (Immunoglobulin enhancer-binding factor E12/E47) (Immunoglobulin transcription factor 1) (Kappa-E2-binding factor) (Transcription factor 3) (TCF-3) (Transcription factor ITF-1)
[GABPB1 E4TF1B GABPB GABPB2] GA-binding protein subunit beta-1 (GABP subunit beta-1) (GABPB-1) (GABP subunit beta-2) (GABPB-2) (Nuclear respiratory factor 2) (Transcription factor E4TF1-47) (Transcription factor E4TF1-53)
[Ybx1 Msy-1 Msy1 Nsep1 Yb1] Nuclease-sensitive element-binding protein 1 (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Y-box transcription factor) (Y-box-binding protein 1) (YB-1)
[Atf5 Atfx Nap1] Cyclic AMP-dependent transcription factor ATF-5 (cAMP-dependent transcription factor ATF-5) (Activating transcription factor 5-alpha/beta) (BZIP protein ATF7) (NAP1) (NRIF3-associated protein) (Transcription factor ATFx) (Transcription factor-like protein ODA-10)
[Ybx1 Msy-1 Nsep1 Yb1] Nuclease-sensitive element-binding protein 1 (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Y-box transcription factor) (Y-box-binding protein 1) (YB-1)
[TCF12 BHLHB20 HEB HTF4] Transcription factor 12 (TCF-12) (Class B basic helix-loop-helix protein 20) (bHLHb20) (DNA-binding protein HTF4) (E-box-binding protein) (Transcription factor HTF-4)
[Apex1 Ape Apex Ref1] DNA-(apurinic or apyrimidinic site) lyase (EC 3.1.-.-) (EC 4.2.99.18) (APEX nuclease) (APEN) (Apurinic-apyrimidinic endonuclease 1) (AP endonuclease 1) (REF-1) (Redox factor-1) [Cleaved into: DNA-(apurinic or apyrimidinic site) lyase, mitochondrial]
[ZFHX3 ATBF1] Zinc finger homeobox protein 3 (AT motif-binding factor 1) (AT-binding transcription factor 1) (Alpha-fetoprotein enhancer-binding protein) (Zinc finger homeodomain protein 3) (ZFH-3)
[ATF2 CREB2 CREBP1] Cyclic AMP-dependent transcription factor ATF-2 (cAMP-dependent transcription factor ATF-2) (EC 2.3.1.48) (Activating transcription factor 2) (Cyclic AMP-responsive element-binding protein 2) (CREB-2) (cAMP-responsive element-binding protein 2) (HB16) (Histone acetyltransferase ATF2) (cAMP response element-binding protein CRE-BP1)
[Ptf1a Ptf1p48] Pancreas transcription factor 1 subunit alpha (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48)
[Tcf12] Transcription factor 12 (TCF-12) (DNA-binding protein HTF4) (E-box-binding protein) (Salivary-specific cAMP response element-binding protein alpha) (SCBP-alpha) (Transcription factor HTF-4)
[PIF1 BHLH15 EN101 PIL5 At2g20180 T2G17.2] Transcription factor PIF1 (Basic helix-loop-helix protein 15) (AtbHLH15) (bHLH 15) (Protein PHY-INTERACTING FACTOR 1) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) (Transcription factor EN 101) (bHLH transcription factor bHLH015)
[Tbx21 Tbet Tblym] T-box transcription factor TBX21 (T-box protein 21) (T-cell-specific T-box transcription factor T-bet) (Transcription factor TBLYM)
[ATF6] Cyclic AMP-dependent transcription factor ATF-6 alpha (cAMP-dependent transcription factor ATF-6 alpha) (Activating transcription factor 6 alpha) (ATF6-alpha) [Cleaved into: Processed cyclic AMP-dependent transcription factor ATF-6 alpha]
[Yy1 Ucrbp] Transcriptional repressor protein YY1 (Delta transcription factor) (NF-E1) (UCR-motif DNA-binding protein) (Yin and yang 1) (YY-1)
[RUNX2 AML3 CBFA1 OSF2 PEBP2A] Runt-related transcription factor 2 (Acute myeloid leukemia 3 protein) (Core-binding factor subunit alpha-1) (CBF-alpha-1) (Oncogene AML-3) (Osteoblast-specific transcription factor 2) (OSF-2) (Polyomavirus enhancer-binding protein 2 alpha A subunit) (PEA2-alpha A) (PEBP2-alpha A) (SL3-3 enhancer factor 1 alpha A subunit) (SL3/AKV core-binding factor alpha A subunit)
[NR5A2 B1F CPF FTF] Nuclear receptor subfamily 5 group A member 2 (Alpha-1-fetoprotein transcription factor) (B1-binding factor) (hB1F) (CYP7A promoter-binding factor) (Hepatocytic transcription factor) (Liver receptor homolog 1) (LRH-1)
[TFAP2C] Transcription factor AP-2 gamma (AP2-gamma) (Activating enhancer-binding protein 2 gamma) (Transcription factor ERF-1)
[IKZF1 IK1 IKAROS LYF1 ZNFN1A1] DNA-binding protein Ikaros (Ikaros family zinc finger protein 1) (Lymphoid transcription factor LyF-1)
[TCF4 BHLHB19 ITF2 SEF2] Transcription factor 4 (TCF-4) (Class B basic helix-loop-helix protein 19) (bHLHb19) (Immunoglobulin transcription factor 2) (ITF-2) (SL3-3 enhancer factor 2) (SEF-2)
[RRS1 RCH2 RRS1-S RSH4 SLH1 WRKY52 At5g45260/At5g45270 K9E15.2/K9E15.3] Disease resistance protein RRS1 (Disease resistance protein RCH2) (Disease resistance protein SLH1) (Probable WRKY transcription factor 52) (Protein RPS4-homolog) (Protein SENSITIVE TO LOW HUMIDITY 1) (Resistance to Colletotrichum higginsianum 2 protein) (Resistance to Ralstonia solanacearum 1 protein) (WRKY DNA-binding protein 52)

Bibliography :
[24889508] Functional domains of the PETAL LOSS protein, a trihelix transcription factor that represses regional growth in Arabidopsis thaliana.
[18080804] A gain-of-function mutation of transcriptional factor PTL results in curly leaves, dwarfism and male sterility by affecting auxin homeostasis.
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