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U1 snRNP-associated protein usp106 (Protein luc7)

 LUC7_SCHPO              Reviewed;         264 AA.
Q9USM4;
10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
03-JUL-2019, entry version 98.
RecName: Full=U1 snRNP-associated protein usp106;
AltName: Full=Protein luc7;
Name=usp106; Synonyms=luc7; ORFNames=SPCC16A11.13;
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
Schizosaccharomycetes; Schizosaccharomycetales;
Schizosaccharomycetaceae; Schizosaccharomyces.
NCBI_TaxID=284812;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=972 / ATCC 24843;
PubMed=11859360; DOI=10.1038/nature724;
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A.,
Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S.,
Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M.,
Collins M., Connor R., Cronin A., Davis P., Feltwell T., Fraser A.,
Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G.,
Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K.,
James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J.,
Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C.,
Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E.,
Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S.,
Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K.,
Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S.,
Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B.,
Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D.,
Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R.,
Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B.,
Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S.,
Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M.,
Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G.,
Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J.,
Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L.,
Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J.,
Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.;
"The genome sequence of Schizosaccharomyces pombe.";
Nature 415:871-880(2002).
[2]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=16823372; DOI=10.1038/nbt1222;
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S.,
Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S.,
Yoshida M.;
"ORFeome cloning and global analysis of protein localization in the
fission yeast Schizosaccharomyces pombe.";
Nat. Biotechnol. 24:841-847(2006).
[3]
IDENTIFICATION IN THE U1 SNRNP COMPLEX, AND FUNCTION.
PubMed=17264129; DOI=10.1093/nar/gkl1144;
Newo A.N.S., Luetzelberger M., Bottner C.A., Wehland J., Wissing J.,
Jaensch L., Kaeufer N.F.;
"Proteomic analysis of the U1 snRNP of Schizosaccharomyces pombe
reveals three essential organism-specific proteins.";
Nucleic Acids Res. 35:1391-1401(2007).
-!- FUNCTION: Component of the U1 snRNP particle, which recognizes and
binds the 5'-splice site of pre-mRNA. Together with other non-
snRNP factors, U1 snRNP forms the spliceosomal commitment complex,
that targets pre-mRNA to the splicing pathway.
{ECO:0000269|PubMed:17264129}.
-!- SUBUNIT: Component of the U1 snRNP particle, a subcomplex of the
spliceosome. {ECO:0000269|PubMed:17264129}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:16823372}.
Nucleus {ECO:0000269|PubMed:16823372}.
-!- SIMILARITY: Belongs to the Luc7 family. {ECO:0000305}.
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EMBL; CU329672; CAB53085.1; -; Genomic_DNA.
PIR; T41086; T41086.
RefSeq; NP_588000.1; NM_001022991.2.
BioGrid; 275628; 14.
IntAct; Q9USM4; 1.
STRING; 4896.SPCC16A11.13.1; -.
MaxQB; Q9USM4; -.
PaxDb; Q9USM4; -.
PRIDE; Q9USM4; -.
EnsemblFungi; SPCC16A11.13.1; SPCC16A11.13.1:pep; SPCC16A11.13.
GeneID; 2539055; -.
KEGG; spo:SPCC16A11.13; -.
EuPathDB; FungiDB:SPCC16A11.13; -.
PomBase; SPCC16A11.13; -.
HOGENOM; HOG000215956; -.
InParanoid; Q9USM4; -.
OMA; CPYDLFQ; -.
PhylomeDB; Q9USM4; -.
PRO; PR:Q9USM4; -.
Proteomes; UP000002485; Chromosome III.
GO; GO:0005829; C:cytosol; HDA:PomBase.
GO; GO:0005634; C:nucleus; HDA:PomBase.
GO; GO:0005685; C:U1 snRNP; IDA:PomBase.
GO; GO:0071004; C:U2-type prespliceosome; ISO:PomBase.
GO; GO:0003729; F:mRNA binding; ISO:PomBase.
GO; GO:0000395; P:mRNA 5'-splice site recognition; IC:PomBase.
GO; GO:0006376; P:mRNA splice site selection; IBA:GO_Central.
InterPro; IPR004882; Luc7-rel.
PANTHER; PTHR12375; PTHR12375; 1.
Pfam; PF03194; LUC7; 1.
1: Evidence at protein level;
Coiled coil; Complete proteome; Cytoplasm; mRNA processing;
mRNA splicing; Nucleus; Reference proteome; Ribonucleoprotein;
Spliceosome.
CHAIN 1 264 U1 snRNP-associated protein usp106.
/FTId=PRO_0000362156.
COILED 83 126 {ECO:0000255}.
SEQUENCE 264 AA; 30937 MW; DC74E10B3AA84F2F CRC64;
MAAEQRKIIE QLMGSNLSNF TSRGLVHFTD RKVCRSFLCG ICPHDIFTNT KMDLGPCPKI
HSDKLKSDYE RASYSHDYGY EWDYLEDLER HVDDCNKRID IAEARREKTK EEEERIDELM
RDIIHTDHSI EVIITEMEAL AKRKLVNDAV KHFIELNRLK TYRKELYDEV ISMNEIPSQA
STTHQKLQVC DICSAYLSRL DNDRRLADHF SGKMHLGYAM LRNIARDLRA QLEDREKSRD
KKDGEKQRDN LASFEDKIST SFVA


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WP2199: Seed Development
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WP2032: TSH signaling pathway
WP1675: Nitrogen metabolism
WP813: G Protein Signaling Pathways
WP1685: Peptidoglycan biosynthesis
WP1616: ABC transporters
WP1644: DNA replication
WP2272: Pathogenic Escherichia coli infection
WP1692: Protein export
WP1700: Selenoamino acid metabolism
WP1657: Glycerolipid metabolism
WP2324: AGE/RAGE pathway
WP1663: Homologous recombination
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WP1371: G Protein Signaling Pathways
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WP1502: Mitochondrial biogenesis

Related Genes :
[YHC1 YLR298C L8003.21] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[usp103 yhc1 SPBP35G2.09] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[MUD1 YBR119W YBR0915] U1 small nuclear ribonucleoprotein A (U1 snRNP A) (U1-A) (U1A) (Mutant U1 die protein 1)
[SNRPC] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[] Replicase large subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 2.7.7.48) (EC 3.6.4.13) (183 kDa protein) (RNA-directed RNA polymerase) [Cleaved into: Replicase small subunit (EC 2.1.1.-) (EC 2.7.7.-) (EC 3.6.4.13) (126 kDa protein) (Methyltransferase/RNA helicase) (MT/HEL)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[env] Envelope glycoprotein gp160 (Env polyprotein) [Cleaved into: Surface protein gp120 (SU) (Glycoprotein 120) (gp120); Transmembrane protein gp41 (TM) (Glycoprotein 41) (gp41)]
[snRNP-U1-C CG5454] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[Snrpc Snrp1c] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[Snrpc] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[USA1 YML029W] U1 SNP1-associating protein 1
[CYP2U1] Cytochrome P450 2U1 (EC 1.14.14.1)
[snrpc] U1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
[RBM25 RNPC7] RNA-binding protein 25 (Arg/Glu/Asp-rich protein of 120 kDa) (RED120) (Protein S164) (RNA-binding motif protein 25) (RNA-binding region-containing protein 7)
[IST3 SNU17 YIR005W YIB5W] U2 snRNP component IST3 (Increased sodium tolerance protein 3) (U2 snRNP protein SNU17)
[SNRNP200 ASCC3L1 HELIC2 KIAA0788] U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog) (U5 snRNP-specific 200 kDa protein) (U5-200KD)
[SNRPE] Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE)
[Snrpb] Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (snRPB) (Sm protein B) (Sm-B) (SmB)
[Snrpb] Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (snRPB) (SM11) (Sm protein B) (Sm-B) (SmB)
[SNRPD1] Small nuclear ribonucleoprotein Sm D1 (Sm-D1) (Sm-D autoantigen) (snRNP core protein D1)
[SNRPB COD SNRPB1] Small nuclear ribonucleoprotein-associated proteins B and B' (snRNP-B) (Sm protein B/B') (Sm-B/B') (SmB/B')
[SNRPD3] Small nuclear ribonucleoprotein Sm D3 (Sm-D3) (snRNP core protein D3)
[SNRPF PBSCF] Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF)
[SNRPG PBSCG] Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG)
[Snrpd3] Small nuclear ribonucleoprotein Sm D3 (Sm-D3) (snRNP core protein D3)
[SMD1 YGR074W] Small nuclear ribonucleoprotein Sm D1 (Sm-D1) (snRNP core protein D1)

Bibliography :