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XRE family transcriptional regulator

 A0A081MF53_9RHIZ        Unreviewed;        94 AA.
A0A081MF53;
29-OCT-2014, integrated into UniProtKB/TrEMBL.
29-OCT-2014, sequence version 1.
10-APR-2019, entry version 22.
SubName: Full=XRE family transcriptional regulator {ECO:0000313|EMBL:KEQ04826.1};
ORFNames=GV67_06820 {ECO:0000313|EMBL:KEQ04826.1};
Pseudorhizobium pelagicum.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Rhizobium/Agrobacterium group; Pseudorhizobium.
NCBI_TaxID=1509405 {ECO:0000313|EMBL:KEQ04826.1, ECO:0000313|Proteomes:UP000052187};
[1] {ECO:0000313|Proteomes:UP000052187}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=R1-200B4 {ECO:0000313|Proteomes:UP000052187};
Kimes N.E., Lopez-Perez M.;
"Rhizobium pelagicum/R1-200B2.";
Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:KEQ04826.1, ECO:0000313|Proteomes:UP000052187}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=R1-200B4 {ECO:0000313|EMBL:KEQ04826.1,
ECO:0000313|Proteomes:UP000052187};
PubMed=26078205; DOI=10.1016/j.syapm.2015.05.003;
Kimes N.E., Lopez-Perez M., Flores-Felix J.D., Ramirez-Bahena M.H.,
Igual J.M., Peix A., Rodriguez-Valera F., Velazquez E.;
"Pseudorhizobium pelagicum gen. nov., sp. nov. isolated from a pelagic
Mediterranean zone.";
Syst. Appl. Microbiol. 38:293-299(2015).
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:KEQ04826.1}.
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EMBL; JOKI01000016; KEQ04826.1; -; Genomic_DNA.
RefSeq; WP_037167316.1; NZ_JOKJ01000033.1.
STRING; 1509405.GV67_06820; -.
EnsemblBacteria; KEQ04826; KEQ04826; GV67_06820.
OrthoDB; 2063007at2; -.
BioCyc; GCF_000722615:G1E72-3171-MONOMER; -.
Proteomes; UP000052187; Unassembled WGS sequence.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
CDD; cd00093; HTH_XRE; 1.
InterPro; IPR001387; Cro/C1-type_HTH.
InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
Pfam; PF01381; HTH_3; 1.
SMART; SM00530; HTH_XRE; 1.
SUPFAM; SSF47413; SSF47413; 1.
PROSITE; PS50943; HTH_CROC1; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000052187};
Reference proteome {ECO:0000313|Proteomes:UP000052187}.
DOMAIN 6 63 HTH cro/C1-type.
{ECO:0000259|PROSITE:PS50943}.
SEQUENCE 94 AA; 10423 MW; 708DD5FD62ED659D CRC64;
MLGKLIRIGR VERGLTAQEL ADRAGISRTT LSSIEKGAAG PEIGIVFEVA SLVGVRLFDY
DERTFQIHNS RVDEKLTLLP KSVRHAVKEV DDDF


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Kits Elisa; taq POLYMERASE

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Pathways :
WP1909: Signal regulatory protein (SIRP) family interactions
WP1485: Interactions between CFTR and other ion channels
WP1493: Carbon assimilation C4 pathway
WP1689: Porphyrin and chlorophyll metabolism
WP1780: ABC-family proteins mediated transport
WP1799: Costimulation by the CD28 family
WP1901: Regulatory RNA pathways
WP201: Ptf1a related regulatory pathway
WP731: Sterol regulatory element binding protein related

Related Genes :
[nadR nadI b4390 JW5800] Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase (NMN adenylyltransferase) (NMN-AT) (NMNAT) (EC 2.7.7.1) (Nicotinamide ribonucleotide adenylyltransferase) (Nicotinamide-nucleotide adenylyltransferase); Ribosylnicotinamide kinase (RNK) (EC 2.7.1.22) (Nicotinamide riboside kinase) (NRK) (NmR-K)]
[UME6 CAR80 CARGR1 NIM2 RIM16 YDR207C YD8142.04C] Transcriptional regulatory protein UME6 (Negative transcriptional regulator of IME2) (Regulator of inducer of meiosis protein 16) (Unscheduled meiotic gene expression protein 6)
[nadR nadI pnuA STM4580] Trifunctional NAD biosynthesis/regulator protein NadR [Includes: Transcriptional regulator NadR; Nicotinamide mononucleotide adenylyltransferase (NMN adenylyltransferase) (NMN-AT) (NMNAT) (EC 2.7.7.1) (Nicotinamide ribonucleotide adenylyltransferase) (Nicotinamide-nucleotide adenylyltransferase); Ribosylnicotinamide kinase (RNK) (EC 2.7.1.22) (Nicotinamide riboside kinase) (NRK) (NmR-K)]
[ovo svb CG6824] Transcriptional regulator ovo (Transcriptional repressor shavenbaby) (Transcriptional repressor svb) [Cleaved into: Transcriptional activator shavenbaby (Transcriptional activator svb)]
[whiD wblB whiB3 SCO4767] Transcriptional regulator WhiD (Transcriptional regulator WhiB3)
[mntR yqhN BSU24520] HTH-type transcriptional regulator MntR (Manganese transport regulator) (Manganese(II) metalloregulatory protein MntR)
[malT malA b3418 JW3381] HTH-type transcriptional regulator MalT (ATP-dependent transcriptional activator MalT)
[ATRX RAD54L XH2] Transcriptional regulator ATRX (EC 3.6.4.12) (ATP-dependent helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX)
[flhD flbB b1892 JW1881] Flagellar transcriptional regulator FlhD
[cueR copR ybbI b0487 JW0476] HTH-type transcriptional regulator CueR (Copper efflux regulator) (Copper export regulator)
[modE modR b0761 JW0744] DNA-binding transcriptional dual regulator ModE
[Atrx Hp1bp2 Xnp] Transcriptional regulator ATRX (EC 3.6.4.12) (ATP-dependent helicase ATRX) (HP1 alpha-interacting protein) (HP1-BP38 protein) (Heterochromatin protein 2) (X-linked nuclear protein)
[ZBTB33 KAISO ZNF348] Transcriptional regulator Kaiso (Zinc finger and BTB domain-containing protein 33)
[sarR SAOUHSC_02566] HTH-type transcriptional regulator SarR (Staphylococcal accessory regulator R)
[NRG1 CAALFM_C704230WA CaO19.7150] Transcriptional regulator NRG1
[TTHA1359] Transcriptional regulator SdrP (Cyclic AMP receptor protein/Fumarate and nitrate reduction regulator superfamily protein SdrP) (CRP/FNR superfamily protein SdrP) (Oxidative stress-responsive transcriptional activator SdrP) (Stationary phase-dependent regulatory protein) (SdrP)
[ERG] Transcriptional regulator ERG (Transforming protein ERG)
[crp cap csm b3357 JW5702] cAMP-activated global transcriptional regulator CRP (Catabolite activator protein) (CAP) (Catabolite gene activator) (cAMP receptor protein) (CRP) (cAMP regulatory protein)
[glxR cg0350 Cgl0291] CRP-like cAMP-activated global transcriptional regulator (cAMP receptor protein) (CRP) (cAMP regulatory protein)
[ATRX] Transcriptional regulator ATRX (EC 3.6.4.12) (ATP-dependent helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP)
[SIN4 BEL2 GAL22 MED16 RYE1 SDI3 SSF5 SSN4 TSF3 YNL236W N1135] Mediator of RNA polymerase II transcription subunit 16 (Global transcriptional regulator SIN4) (Mediator complex subunit 16) (SNF1 suppressor protein 4) (SWI4 suppressor protein 5) (Transcriptional silencing factor 3) (YGP1 expression regulatory protein 1)
[sarA MW0580] Transcriptional regulator SarA (Staphylococcal accessory regulator A)
[rcsB b2217 JW2205] Transcriptional regulatory protein RcsB (Capsular synthesis regulator component B)
[SLK2 At5g62090 MTG10.12] Probable transcriptional regulator SLK2 (AtSLK2) (Protein SEUSS-like 2)
[tnrA scgR BSU13310] HTH-type transcriptional regulator TnrA (Transcriptional nitrogen regulatory protein A) (TnrA)
[Atrx] Transcriptional regulator ATRX (EC 3.6.4.12) (ATP-dependent helicase ATRX) (X-linked nuclear protein) (pABP-2) (Fragment)
[zbtb33 kaiso] Transcriptional regulator Kaiso (Zinc finger and BTB domain-containing protein 33) (xKaiso)
[ATRX] Transcriptional regulator ATRX (EC 3.6.4.12) (ATP-dependent helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP)
[argP iciA b2916 JW2883] HTH-type transcriptional regulator ArgP (Inhibitor of chromosome initiation) (OriC replication inhibitor)
[whiB4 Rv3681c] Transcriptional regulator WhiB4

Bibliography :
[30687648] The XRE Family Transcriptional Regulator SrtR in Is Involved in Oxidant Tolerance and Virulence.
[30100900] Quantitative Proteomics Analysis of Membrane Proteins in With Low-Level Linezolid-Resistance.
[26424795] Homocitrullination Is a Novel Histone H1 Epigenetic Mark Dependent on Aryl Hydrocarbon Receptor Recruitment of Carbamoyl Phosphate Synthase 1.
[25642223] Genes encoding conserved hypothetical proteins localized in the conjugative transfer region of plasmid pRet42a from Rhizobium etli CFN42 participate in modulating transfer and affect conjugation from different donors.
[25141024] Aryl hydrocarbon receptor negatively regulates NLRP3 inflammasome activity by inhibiting NLRP3 transcription.
[22844465] Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.
[20675497] Transcriptional profiling of XdrA, a new regulator of spa transcription in Staphylococcus aureus.
[19336243] Characterization of a cryptic plasmid pSFKW33 from Shewanella sp. 33B.
[18223155] Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
[15634675] BzdR, a repressor that controls the anaerobic catabolism of benzoate in Azoarcus sp. CIB, is the first member of a new subfamily of transcriptional regulators.