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dITP/XTP pyrophosphatase (EC 3.6.1.66) (Non-canonical purine NTP pyrophosphatase) (Non-standard purine NTP pyrophosphatase) (Nucleoside-triphosphate diphosphatase) (Nucleoside-triphosphate pyrophosphatase) (NTPase)

 IXTPA_MYCMS             Reviewed;         200 AA.
Q6MT00;
26-APR-2005, integrated into UniProtKB/Swiss-Prot.
05-JUL-2004, sequence version 1.
05-DEC-2018, entry version 85.
RecName: Full=dITP/XTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405};
EC=3.6.1.66 {ECO:0000255|HAMAP-Rule:MF_01405};
AltName: Full=Non-canonical purine NTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405};
AltName: Full=Non-standard purine NTP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405};
AltName: Full=Nucleoside-triphosphate diphosphatase {ECO:0000255|HAMAP-Rule:MF_01405};
AltName: Full=Nucleoside-triphosphate pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01405};
Short=NTPase {ECO:0000255|HAMAP-Rule:MF_01405};
OrderedLocusNames=MSC_0616;
Mycoplasma mycoides subsp. mycoides SC (strain PG1).
Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma.
NCBI_TaxID=272632;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=PG1;
PubMed=14762060; DOI=10.1101/gr.1673304;
Westberg J., Persson A., Holmberg A., Goesmann A., Lundeberg J.,
Johansson K.-E., Pettersson B., Uhlen M.;
"The genome sequence of Mycoplasma mycoides subsp. mycoides SC type
strain PG1T, the causative agent of contagious bovine pleuropneumonia
(CBPP).";
Genome Res. 14:221-227(2004).
-!- FUNCTION: Pyrophosphatase that catalyzes the hydrolysis of
nucleoside triphosphates to their monophosphate derivatives, with
a high preference for the non-canonical purine nucleotides XTP
(xanthosine triphosphate), dITP (deoxyinosine triphosphate) and
ITP. Seems to function as a house-cleaning enzyme that removes
non-canonical purine nucleotides from the nucleotide pool, thus
preventing their incorporation into DNA/RNA and avoiding
chromosomal lesions. {ECO:0000255|HAMAP-Rule:MF_01405}.
-!- CATALYTIC ACTIVITY:
Reaction=H2O + XTP = diphosphate + H(+) + XMP;
Xref=Rhea:RHEA:28610, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
ChEBI:CHEBI:33019, ChEBI:CHEBI:57464, ChEBI:CHEBI:61314;
EC=3.6.1.66; Evidence={ECO:0000255|HAMAP-Rule:MF_01405};
-!- CATALYTIC ACTIVITY:
Reaction=dITP + H2O = dIMP + diphosphate + H(+);
Xref=Rhea:RHEA:28342, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
ChEBI:CHEBI:33019, ChEBI:CHEBI:61194, ChEBI:CHEBI:61382;
EC=3.6.1.66; Evidence={ECO:0000255|HAMAP-Rule:MF_01405};
-!- CATALYTIC ACTIVITY:
Reaction=H2O + ITP = diphosphate + H(+) + IMP;
Xref=Rhea:RHEA:29399, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
ChEBI:CHEBI:33019, ChEBI:CHEBI:58053, ChEBI:CHEBI:61402;
EC=3.6.1.66; Evidence={ECO:0000255|HAMAP-Rule:MF_01405};
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000255|HAMAP-Rule:MF_01405};
Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP-
Rule:MF_01405};
-!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01405}.
-!- SIMILARITY: Belongs to the HAM1 NTPase family. {ECO:0000255|HAMAP-
Rule:MF_01405}.
-----------------------------------------------------------------------
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EMBL; BX293980; CAE77238.1; -; Genomic_DNA.
RefSeq; NP_975596.1; NC_005364.2.
RefSeq; WP_011166792.1; NC_005364.2.
ProteinModelPortal; Q6MT00; -.
SMR; Q6MT00; -.
STRING; 272632.MSC_0616; -.
PRIDE; Q6MT00; -.
EnsemblBacteria; CAE77238; CAE77238; MSC_0616.
GeneID; 2744394; -.
KEGG; mmy:MSC_0616; -.
PATRIC; fig|272632.4.peg.663; -.
eggNOG; ENOG4108V82; Bacteria.
eggNOG; COG0127; LUCA.
HOGENOM; HOG000293319; -.
KO; K02428; -.
OMA; YDPIFQP; -.
BioCyc; MMYC272632:G1G3L-660-MONOMER; -.
Proteomes; UP000001016; Chromosome.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO; GO:0047429; F:nucleoside-triphosphate diphosphatase activity; IEA:UniProtKB-UniRule.
GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
GO; GO:0009117; P:nucleotide metabolic process; IEA:UniProtKB-KW.
GO; GO:0009146; P:purine nucleoside triphosphate catabolic process; IEA:UniProtKB-UniRule.
CDD; cd00515; HAM1; 1.
Gene3D; 3.90.950.10; -; 1.
HAMAP; MF_01405; Non_canon_purine_NTPase; 1.
InterPro; IPR020922; dITP/XTP_pyrophosphatase.
InterPro; IPR002637; Ham1p-like.
InterPro; IPR029001; ITPase-like_fam.
PANTHER; PTHR11067; PTHR11067; 1.
Pfam; PF01725; Ham1p_like; 1.
SUPFAM; SSF52972; SSF52972; 1.
TIGRFAMs; TIGR00042; TIGR00042; 1.
3: Inferred from homology;
Complete proteome; Hydrolase; Magnesium; Metal-binding;
Nucleotide metabolism; Nucleotide-binding; Reference proteome.
CHAIN 1 200 dITP/XTP pyrophosphatase.
/FTId=PRO_0000178194.
REGION 10 15 Substrate binding. {ECO:0000255|HAMAP-
Rule:MF_01405}.
REGION 156 159 Substrate binding. {ECO:0000255|HAMAP-
Rule:MF_01405}.
ACT_SITE 70 70 Proton acceptor. {ECO:0000255|HAMAP-
Rule:MF_01405}.
METAL 41 41 Magnesium. {ECO:0000255|HAMAP-
Rule:MF_01405}.
METAL 70 70 Magnesium. {ECO:0000255|HAMAP-
Rule:MF_01405}.
BINDING 71 71 Substrate; via amide nitrogen.
{ECO:0000255|HAMAP-Rule:MF_01405}.
BINDING 179 179 Substrate. {ECO:0000255|HAMAP-
Rule:MF_01405}.
SEQUENCE 200 AA; 23262 MW; EADD20A8FF455E50 CRC64;
MDKKVIYLAT TNKNKVKEFS EILKDYQIKS LLDIPEYVEI EENKKTFKQN ALLKAKHLAK
YINGVAIGDD TGICVKALND FPGIYSKRWA YPLTNHYDIC NKLLDKLKHI NQLNKRKAYM
TTAIALYDAI NKKQFVYQAR VNGYIDFQVN ESEFGFGYDF IFIPKGYDKA YSLMNSELKN
QISARKKAID KLIEYIDNVK


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Pathways :
WP1709: Thiamine metabolism
WP1694: Pyrimidine metabolism
WP1693: Purine metabolism
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WP2184: Purine metabolism
WP2185: Purine metabolism
WP2340: Thiamine (vitamin B1) biosynthesis and salvage
WP2341: vitamin B1 (thiamin) biosynthesis and salvage pathway
WP416: Superpathway of Histidine, Purine, and Pyrimidine
WP463: Purine Fermentation
WP566: canonical wnt - zebrafish

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Bibliography :