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pH-response transcription factor pacC/RIM101 (pH-response regulator protein 2)

 PACC_CANAL              Reviewed;         661 AA.
Q9UW14; A0A1D8PFX3; Q59ZU5;
21-JUN-2005, integrated into UniProtKB/Swiss-Prot.
21-JUN-2005, sequence version 2.
13-FEB-2019, entry version 104.
RecName: Full=pH-response transcription factor pacC/RIM101;
AltName: Full=pH-response regulator protein 2;
Name=RIM101; Synonyms=HRM101, PRR2;
OrderedLocusNames=CAALFM_C114340CA; ORFNames=CaO19.7247;
Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Debaryomycetaceae;
Candida/Lodderomyces clade; Candida.
NCBI_TaxID=237561;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND MUTAGENESIS OF
463-SER--PHE-661.
STRAIN=SC5314 / CAI4 / ATCC MYA-682;
PubMed=10629054; DOI=10.1128/MCB.20.3.971-978.2000;
Davis D.A., Wilson R.B., Mitchell A.P.;
"RIM101-dependent and -independent pathways govern pH responses in
Candida albicans.";
Mol. Cell. Biol. 20:971-978(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=15123810; DOI=10.1073/pnas.0401648101;
Jones T., Federspiel N.A., Chibana H., Dungan J., Kalman S.,
Magee B.B., Newport G., Thorstenson Y.R., Agabian N., Magee P.T.,
Davis R.W., Scherer S.;
"The diploid genome sequence of Candida albicans.";
Proc. Natl. Acad. Sci. U.S.A. 101:7329-7334(2004).
[3]
GENOME REANNOTATION.
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=17419877; DOI=10.1186/gb-2007-8-4-r52;
van het Hoog M., Rast T.J., Martchenko M., Grindle S., Dignard D.,
Hogues H., Cuomo C., Berriman M., Scherer S., Magee B.B., Whiteway M.,
Chibana H., Nantel A., Magee P.T.;
"Assembly of the Candida albicans genome into sixteen supercontigs
aligned on the eight chromosomes.";
Genome Biol. 8:RESEARCH52.1-RESEARCH52.12(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND GENOME
REANNOTATION.
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=24025428; DOI=10.1186/gb-2013-14-9-r97;
Muzzey D., Schwartz K., Weissman J.S., Sherlock G.;
"Assembly of a phased diploid Candida albicans genome facilitates
allele-specific measurements and provides a simple model for repeat
and indel structure.";
Genome Biol. 14:RESEARCH97.1-RESEARCH97.14(2013).
[5]
FUNCTION, AND INDUCTION.
PubMed=10601210;
Ramon A.M., Porta A., Fonzi W.A.;
"Effect of environmental pH on morphological development of Candida
albicans is mediated via the PacC-related transcription factor encoded
by PRR2.";
J. Bacteriol. 181:7524-7530(1999).
[6]
MUTAGENESIS OF 476-GLN--PHE-661 AND 584-SER--PHE-661.
PubMed=10848590; DOI=10.1128/MCB.20.13.4635-4647.2000;
El Barkani A., Kurzai O., Fonzi W.A., Ramon A.M., Porta A., Frosch M.,
Muehlschlegel F.A.;
"Dominant active alleles of RIM101 (PRR2) bypass the pH restriction on
filamentation of Candida albicans.";
Mol. Cell. Biol. 20:4635-4647(2000).
[7]
DNA-BINDING, AND FUNCTION IN TRANSCRIPTIONAL ACTIVATION.
PubMed=12912891; DOI=10.1128/EC.2.4.718-728.2003;
Ramon A.M., Fonzi W.A.;
"Diverged binding specificity of Rim101p, the Candida albicans
ortholog of PacC.";
Eukaryot. Cell 2:718-728(2003).
[8]
PROTEOLYTIC PROCESSING.
PubMed=15189995; DOI=10.1128/EC.3.3.741-751.2004;
Li M., Martin S.J., Bruno V.M., Mitchell A.P., Davis D.A.;
"Candida albicans Rim13p, a protease required for Rim101p processing
at acidic and alkaline pHs.";
Eukaryot. Cell 3:741-751(2004).
-!- FUNCTION: Transcription factor that mediates regulation of both
acid- and alkaline-expressed genes in response to ambient pH. At
alkaline ambient pH, activates transcription of alkaline-expressed
genes (including RIM101 itself) and represses transcription of
acid-expressed genes. Specifically recognizes and binds the
consensus sequence 5'-CCAAGAA-3'. Required for the control of
alkaline pH-induced filamentation (dimorphic switch) and
virulence. {ECO:0000269|PubMed:10601210,
ECO:0000269|PubMed:12912891}.
-!- SUBUNIT: Binds to DNA. Interacts with RIM20, which binds to the
YPX[LI] motifs and is required for proteolytic processing (By
similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Nucleus
{ECO:0000250}.
-!- INDUCTION: By alkaline conditions. {ECO:0000269|PubMed:10601210}.
-!- PTM: Activated by C-terminal proteolytic cleavage. At neutral to
alkaline ambient pH, the signaling protease (probably RIM13)
cleaves RIM101 to yield the 74 kDa functional form. Also exists as
a 65 kDa form at acidic pH, which may govern pH-independent
processes. {ECO:0000269|PubMed:15189995}.
-!- SIMILARITY: Belongs to the pacC/RIM101 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAD51714.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AF173841; AAD51714.1; ALT_INIT; Genomic_DNA.
EMBL; CP017623; AOW27034.1; -; Genomic_DNA.
RefSeq; XP_715047.1; XM_709954.1.
ProteinModelPortal; Q9UW14; -.
SMR; Q9UW14; -.
BioGrid; 1226374; 1.
IntAct; Q9UW14; 1.
PRIDE; Q9UW14; -.
GeneID; 3643280; -.
KEGG; cal:CAALFM_C114340CA; -.
CGD; CAL0000174156; RIM101.
EuPathDB; FungiDB:C1_14340C_A; -.
InParanoid; Q9UW14; -.
OMA; PLKPFHC; -.
OrthoDB; 1270413at2759; -.
Proteomes; UP000000559; Chromosome 1.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0003677; F:DNA binding; IDA:CGD.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0071469; P:cellular response to alkaline pH; IMP:CGD.
GO; GO:0071280; P:cellular response to copper ion; IMP:CGD.
GO; GO:0035690; P:cellular response to drug; IMP:CGD.
GO; GO:0010106; P:cellular response to iron ion starvation; IMP:CGD.
GO; GO:0071285; P:cellular response to lithium ion; IMP:CGD.
GO; GO:0036244; P:cellular response to neutral pH; IMP:CGD.
GO; GO:0071467; P:cellular response to pH; IDA:CGD.
GO; GO:0001410; P:chlamydospore formation; IMP:CGD.
GO; GO:0044409; P:entry into host; IMP:CGD.
GO; GO:0030447; P:filamentous growth; IMP:CGD.
GO; GO:0044182; P:filamentous growth of a population of unicellular organisms; IMP:CGD.
GO; GO:0036171; P:filamentous growth of a population of unicellular organisms in response to chemical stimulus; IMP:CGD.
GO; GO:0036178; P:filamentous growth of a population of unicellular organisms in response to neutral pH; IMP:CGD.
GO; GO:0036177; P:filamentous growth of a population of unicellular organisms in response to pH; IMP:CGD.
GO; GO:0044416; P:induction by symbiont of host defense response; IMP:CGD.
GO; GO:0009405; P:pathogenesis; IMP:CGD.
GO; GO:1900430; P:positive regulation of filamentous growth of a population of unicellular organisms; IMP:CGD.
GO; GO:1900439; P:positive regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus; IMP:CGD.
GO; GO:0002666; P:positive regulation of T cell tolerance induction; IMP:CGD.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IMP:CGD.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
SMART; SM00355; ZnF_C2H2; 3.
SUPFAM; SSF57667; SSF57667; 2.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 2.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 3.
1: Evidence at protein level;
Coiled coil; Complete proteome; Cytoplasm; Metal-binding; Nucleus;
Reference proteome; Repeat; Repressor; Zinc; Zinc-finger.
CHAIN 1 661 pH-response transcription factor
pacC/RIM101.
/FTId=PRO_0000046824.
ZN_FING 208 233 C2H2-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 244 268 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 274 296 C2H2-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
COILED 626 654 {ECO:0000255}.
MOTIF 290 296 Nuclear localization signal.
MOTIF 498 501 YPX[LI] motif 1.
MOTIF 531 534 YPX[LI] motif 2.
MOTIF 655 658 YPX[LI] motif 3.
COMPBIAS 108 186 Gln-rich.
COMPBIAS 431 436 Poly-His.
COMPBIAS 438 496 Gln-rich.
MUTAGEN 463 661 Missing: In RIM101-405; is active
independent on proteolytic processing.
Allows filamentation at alkaline pH in
the absence of RIM13 or RIM8 and RIM20.
{ECO:0000269|PubMed:10629054}.
MUTAGEN 476 661 Missing: In CEM-1; dominant active allele
that allows filamentation, activates
alkaline-expressed and represses acid-
expressed genes at acidic pH.
{ECO:0000269|PubMed:10848590}.
MUTAGEN 584 661 Missing: In CEM-2; dominant active allele
that allows filamentation, activates
alkaline-expressed and represses acid-
expressed genes at acidic pH.
{ECO:0000269|PubMed:10848590}.
CONFLICT 401 407 AGSAEFT -> RRFWSSSP (in Ref. 1;
AAD51714). {ECO:0000305}.
SEQUENCE 661 AA; 74695 MW; B3C1C613CD8CAA95 CRC64;
MNYNIHPVTY LNADSNTGAS ESTASHHGSK KSPSSDIDVD NATSPSSFTS SQSPHINAMG
NSPHSSFTSQ SAANSPITDA KQHLVKPTTT KPAAFAPSAN QSNTTASQSY TQPAQQLPTQ
LHPSLNQAYN NQPSYYLHQP TYGYQQQQQQ QQQHQEFNQP SQQYHDHHGY YSNNNILNQN
QPAPQQNPVK PFKKTYKKIR DEDLKGPFKC LWSNCNIIFE TPEILYDHLC DDHVGRKSSN
NLSLTCLWEN CGTTTVKRDH ITSHLRVHVP LKPFHCDLCP KSFKRPQDLK KHSKTHAEDH
PKKLKKAQRE LMKQQQKEAK QQQKLANKRA NSMNATTASD LQLNYYSGNP ADGLNYDDTS
RKRRYENNSQ HNMYVVNSIL NDFNFQQMAQ APQQPGVVGT AGSAEFTTKR MKAGTEYNID
VFNKLNHLDD HLHHHHPQQQ HPQQQYGGNI YEAEKFFNSL SNSIDMQYQN MSTQYQQQHA
GSTFAQQKPT QQASGQLYPS LPTIGNGSYT TSGSSHKEGL VNNHNGYLPS YPQINRSLPY
SSGVAQQPPS ALEFGGVSTY QKSAQSYEED SSDSSEEDDY STSSEDELDT LFDKLNIDDN
KVEEVTIDGF NLKDVAKHRE MIHAVLGYLR NQIEQQEKEK SKEQKEVDVN ETKLYPTITA
F


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WP1530: miRNA regulation of DNA Damage Response
WP1579: DNA damage response
WP1689: Porphyrin and chlorophyll metabolism
WP1903: Response to elevated platelet cytosolic Ca2+
WP2087: miRNA regulation of DNA Damage Response
WP2152: BDNF
WP222: Cytokines and Inflammatory Response (BioCarta)
WP271: Cytokines and Inflammatory Response (BioCarta)
WP40: Inflammatory Response Pathway
WP453: Inflammatory Response Pathway
WP458: Inflammatory Response Pathway
WP530: Cytokines and Inflammatory Response
WP707: DNA damage response
WP710: DNA damage response (only ATM dependent)
WP879: Cytokines and Inflammatory Response (BioCarta)
WP920: Inflammatory Response Pathway
WP997: Cytokines and Inflammatory Response (BioCarta)
WP1046: Signaling of Hepatocyte Growth Factor Receptor
WP1049: G Protein Signaling Pathways

Related Genes :
[RIM101 HRM101 PRR2 CAALFM_C114340CA CaO19.7247] pH-response transcription factor pacC/RIM101 (pH-response regulator protein 2)
[NRG1 CAALFM_C704230WA CaO19.7150] Transcriptional regulator NRG1
[PRA1 FBP1 CAALFM_C406980WA CaO19.10623 CaO19.3111] pH-regulated antigen PRA1 (58 kDa fibrinogen-binding mannoprotein)
[XPR2 YALI0F31889g] Alkaline extracellular protease (AEP) (EC 3.4.21.62)
[VPS4 CAALFM_C503090WA CaO19.11814 CaO19.4339] Vacuolar protein sorting-associated protein 4
[Sh2b1 Sh2bpsm1] SH2B adapter protein 1 (Pro-rich, PH and SH2 domain-containing signaling mediator) (PSM) (SH2 domain-containing protein 1B) (SH2-B PH domain-containing signaling mediator 1)
[pacc-1 NCU00090] pH-response transcription factor pacc-1
[ATF2 CREB2 CREBP1] Cyclic AMP-dependent transcription factor ATF-2 (cAMP-dependent transcription factor ATF-2) (EC 2.3.1.48) (Activating transcription factor 2) (Cyclic AMP-responsive element-binding protein 2) (CREB-2) (cAMP-responsive element-binding protein 2) (HB16) (Histone acetyltransferase ATF2) (cAMP response element-binding protein CRE-BP1)
[SOD5 PGA3 SOD31 CAALFM_C200680CA CaO19.2060 CaO19.9607] Cell surface Cu-only superoxide dismutase 5 (EC 1.15.1.1) (Predicted GPI-anchored protein 3)
[Atf2] Cyclic AMP-dependent transcription factor ATF-2 (cAMP-dependent transcription factor ATF-2) (EC 2.3.1.48) (Activating transcription factor 2) (MXBP protein) (cAMP response element-binding protein CRE-BP1)
[Atf2] Cyclic AMP-dependent transcription factor ATF-2 (cAMP-dependent transcription factor ATF-2) (EC 2.3.1.48) (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1)
[whiB3 Rv3416] Redox- and pH-responsive transcriptional regulator WhiB3
[Appl2 Dip13b Dip3b] DCC-interacting protein 13-beta (Dip13-beta) (Adapter protein containing PH domain, PTB domain and leucine zipper motif 2)
[APPL2 DIP13B] DCC-interacting protein 13-beta (Dip13-beta) (Adapter protein containing PH domain, PTB domain and leucine zipper motif 2)
[Sh2b1 Sh2-b Sh2bpsm1] SH2B adapter protein 1 (FceRI gamma-chain-interacting protein SH2-B) (SH2 domain-containing protein 1B) (SH2-B PH domain-containing signaling mediator 1)
[YVC1 CAALFM_C207730WA CaO19.2209 CaO19.9754] Calcium channel YVC1 (Vacuolar transiant receptor potential (TPR) channel YVC1) (Yeast vacuolar conductance protein 1)
[SH2B1 KIAA1299 SH2B] SH2B adapter protein 1 (Pro-rich, PH and SH2 domain-containing signaling mediator) (PSM) (SH2 domain-containing protein 1B)
[Appl1 Dip13a Kiaa1428] DCC-interacting protein 13-alpha (Dip13-alpha) (Adapter protein containing PH domain, PTB domain and leucine zipper motif 1)
[PHLPP2 KIAA0931 PHLPPL] PH domain leucine-rich repeat-containing protein phosphatase 2 (EC 3.1.3.16) (PH domain leucine-rich repeat-containing protein phosphatase-like) (PHLPP-like)
[ZFP36L2 BRF2 ERF2 RNF162C TIS11D] mRNA decay activator protein ZFP36L2 (Butyrate response factor 2) (EGF-response factor 2) (ERF-2) (TPA-induced sequence 11d) (Zinc finger protein 36, C3H1 type-like 2) (ZFP36-like 2)
[EGR1 KROX24 ZNF225] Early growth response protein 1 (EGR-1) (AT225) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor ETR103) (Transcription factor Zif268) (Zinc finger protein 225) (Zinc finger protein Krox-24)
[PHLPP1 KIAA0606 PHLPP PLEKHE1 SCOP] PH domain leucine-rich repeat-containing protein phosphatase 1 (EC 3.1.3.16) (Pleckstrin homology domain-containing family E member 1) (PH domain-containing family E member 1) (Suprachiasmatic nucleus circadian oscillatory protein) (hSCOP)
[Appl2] DCC-interacting protein 13-beta (Adapter protein containing PH domain, PTB domain and leucine zipper motif 2)
[EGLN1 C1orf12 PNAS-118 PNAS-137] Egl nine homolog 1 (EC 1.14.11.29) (Hypoxia-inducible factor prolyl hydroxylase 2) (HIF-PH2) (HIF-prolyl hydroxylase 2) (HPH-2) (Prolyl hydroxylase domain-containing protein 2) (PHD2) (SM-20)
[APPL1 APPL DIP13A KIAA1428] DCC-interacting protein 13-alpha (Dip13-alpha) (Adapter protein containing PH domain, PTB domain and leucine zipper motif 1)
[nef] Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]
[Egr1] Early growth response protein 1 (EGR-1) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor Zif268) (Zinc finger protein Krox-24)
[STAT3 APRF] Signal transducer and activator of transcription 3 (Acute-phase response factor)
[Egr1 Egr-1 Krox-24] Early growth response protein 1 (EGR-1) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor Zif268) (Zinc finger protein Krox-24)
[CPH2 CAALFM_C600280WA CaO19.1187 CaO19.8778] Transcription factor CPH2 (Candida pseudohyphal regulator 2)

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