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tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)

 W7QU50_9ALTE            Unreviewed;       484 AA.
W7QU50;
16-APR-2014, integrated into UniProtKB/TrEMBL.
16-APR-2014, sequence version 1.
16-JAN-2019, entry version 32.
RecName: Full=tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS01082725};
EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00848765};
AltName: Full=Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021};
AltName: Full=Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021};
AltName: Full=tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021};
Name=thiI {ECO:0000256|HAMAP-Rule:MF_00021};
ORFNames=DS2_04290 {ECO:0000313|EMBL:EWH11363.1};
Catenovulum agarivorans DS-2.
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Alteromonadaceae; Catenovulum.
NCBI_TaxID=1328313 {ECO:0000313|EMBL:EWH11363.1, ECO:0000313|Proteomes:UP000019276};
[1] {ECO:0000313|EMBL:EWH11363.1, ECO:0000313|Proteomes:UP000019276}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=DS-2 {ECO:0000313|EMBL:EWH11363.1,
ECO:0000313|Proteomes:UP000019276};
PubMed=24604650;
Shan D., Li X., Gu Z., Wei G., Gao Z., Shao Z.;
"Draft Genome Sequence of the Agar-Degrading Bacterium Catenovulum sp.
Strain DS-2, Isolated from Intestines of Haliotis diversicolor.";
Genome Announc. 2:e00144-14(2014).
-!- FUNCTION: Catalyzes the ATP-dependent transfer of a sulfur to tRNA
to produce 4-thiouridine in position 8 of tRNAs, which functions
as a near-UV photosensor. Also catalyzes the transfer of sulfur to
the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate.
This is a step in the synthesis of thiazole, in the thiamine
biosynthesis pathway. The sulfur is donated as persulfide by IscS.
{ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00848766}.
-!- CATALYTIC ACTIVITY:
Reaction=[ThiI sulfur-carrier protein]-S-sulfanyl-L-cysteine + a
uridine in tRNA + ATP + H(+) + 2 reduced [2Fe-2S]-[ferredoxin] =
[ThiI sulfur-carrier protein]-L-cysteine + a 4-thiouridine in
tRNA + AMP + diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin];
Xref=Rhea:RHEA:24176, Rhea:RHEA-COMP:10000, Rhea:RHEA-
COMP:10001, Rhea:RHEA-COMP:13337, Rhea:RHEA-COMP:13338,
Rhea:RHEA-COMP:13339, Rhea:RHEA-COMP:13340, ChEBI:CHEBI:15378,
ChEBI:CHEBI:29950, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019,
ChEBI:CHEBI:33737, ChEBI:CHEBI:33738, ChEBI:CHEBI:61963,
ChEBI:CHEBI:65315, ChEBI:CHEBI:136798, ChEBI:CHEBI:456215;
EC=2.8.1.4; Evidence={ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS01118926};
-!- CATALYTIC ACTIVITY:
Reaction=[sulfur-carrier protein ThiS]-C-terminal Gly-Gly-AMP +
AH2 + S-sulfanyl-L-cysteinyl-[cysteine desulfurase] = [sulfur-
carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH + A + AMP +
H(+) + L-cysteinyl-[cysteine desulfurase]; Xref=Rhea:RHEA:43340,
Rhea:RHEA-COMP:12157, Rhea:RHEA-COMP:12158, Rhea:RHEA-
COMP:12908, Rhea:RHEA-COMP:12910, ChEBI:CHEBI:13193,
ChEBI:CHEBI:15378, ChEBI:CHEBI:17499, ChEBI:CHEBI:29950,
ChEBI:CHEBI:61963, ChEBI:CHEBI:90618, ChEBI:CHEBI:90619,
ChEBI:CHEBI:456215; Evidence={ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS01118903};
-!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis.
{ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00848764}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848759}.
-!- SIMILARITY: Belongs to the ThiI family. {ECO:0000256|HAMAP-
Rule:MF_00021, ECO:0000256|SAAS:SAAS00848754}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_00021}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:EWH11363.1}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; ARZY01000005; EWH11363.1; -; Genomic_DNA.
EnsemblBacteria; EWH11363; EWH11363; DS2_04290.
PATRIC; fig|1328313.3.peg.887; -.
UniPathway; UPA00060; -.
Proteomes; UP000019276; Unassembled WGS sequence.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0016783; F:sulfurtransferase activity; IEA:UniProtKB-UniRule.
GO; GO:0004810; F:tRNA adenylyltransferase activity; IEA:InterPro.
GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-UniRule.
GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-UniRule.
GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-UniPathway.
GO; GO:0052837; P:thiazole biosynthetic process; IEA:InterPro.
GO; GO:0034227; P:tRNA thio-modification; IEA:UniProtKB-UniRule.
CDD; cd01712; ThiI; 1.
Gene3D; 3.40.250.10; -; 1.
Gene3D; 3.40.50.620; -; 1.
HAMAP; MF_00021; ThiI; 1.
InterPro; IPR001763; Rhodanese-like_dom.
InterPro; IPR036873; Rhodanese-like_dom_sf.
InterPro; IPR014729; Rossmann-like_a/b/a_fold.
InterPro; IPR026340; Thiazole_biosynth_dom.
InterPro; IPR020536; ThiI_AANH.
InterPro; IPR004114; THUMP_dom.
InterPro; IPR003720; tRNA_STrfase.
Pfam; PF02568; ThiI; 1.
Pfam; PF02926; THUMP; 1.
SMART; SM00981; THUMP; 1.
SUPFAM; SSF52821; SSF52821; 1.
TIGRFAMs; TIGR04271; ThiI_C_thiazole; 1.
TIGRFAMs; TIGR00342; TIGR00342; 1.
PROSITE; PS50206; RHODANESE_3; 1.
PROSITE; PS51165; THUMP; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00023005};
Complete proteome {ECO:0000313|Proteomes:UP000019276};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848768};
Disulfide bond {ECO:0000256|SAAS:SAAS01082722};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00023005};
Redox-active center {ECO:0000256|SAAS:SAAS01082719};
Reference proteome {ECO:0000313|Proteomes:UP000019276};
RNA-binding {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848757};
Thiamine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848763};
Transferase {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848758, ECO:0000313|EMBL:EWH11363.1};
tRNA-binding {ECO:0000256|HAMAP-Rule:MF_00021,
ECO:0000256|SAAS:SAAS00848757}.
DOMAIN 61 165 THUMP. {ECO:0000259|PROSITE:PS51165}.
DOMAIN 404 484 Rhodanese. {ECO:0000259|PROSITE:PS50206}.
NP_BIND 183 184 ATP. {ECO:0000256|HAMAP-Rule:MF_00021}.
ACT_SITE 457 457 Cysteine persulfide intermediate.
{ECO:0000256|HAMAP-Rule:MF_00021}.
BINDING 265 265 ATP. {ECO:0000256|HAMAP-Rule:MF_00021}.
BINDING 287 287 ATP; via amide nitrogen.
{ECO:0000256|HAMAP-Rule:MF_00021}.
BINDING 296 296 ATP. {ECO:0000256|HAMAP-Rule:MF_00021}.
SEQUENCE 484 AA; 54830 MW; 9337DC43C9DEB290 CRC64;
MIKFIVKMHP EISIKSRSVR QRFTKILESN IKNVLRKVDE KAWVQRQWDC VEVRGSDDKR
DILIERLQCI PGVTNFSEVK QYPFKSFDDT CDIVLPHCQS QLENKSFCVR VKRRGSHDFK
SKDLEQYVGG YLNQTIASAK VKLKNPDVTV MLEVANDQLF VMGDKYKGLG GFPIATQDEI
LSLISGGFDS GVATYETMRR GIKTHFIFFN LGGSAHEIGV KQVSYYLWAK YGVSHRVKFV
SVDFQPVVAE ILENIDNGLM GVVLKRMMLR AASLAAKRMG IKALVTGEAL GQVSSQTLAN
LAVIDKVTDT LVVRPLVTMD KQDIIDVARK IGTEDFAKTM PEYCGVISQR PNIAAPEDKV
IAAEENFYMP LIEQVVDNAK LYDIKELKTE TEQTVTEVAS VTEIQANQVV IDIRSVEEEE
LEPLELAEDV EVVHIPFFKL ATQYEKLDQS KEYLLYCKKG VMSRLQALYL QEQGYQNVKL
FNLL


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Pathways :
WP2199: Seed Development
WP1502: Mitochondrial biogenesis
WP1566: Citrate cycle (TCA cycle)
WP1620: Aminoacyl-tRNA biosynthesis
WP1685: Peptidoglycan biosynthesis
WP211: BMP signaling pathway
WP2340: Thiamine (vitamin B1) biosynthesis and salvage
WP2341: vitamin B1 (thiamin) biosynthesis and salvage pathway
WP1049: G Protein Signaling Pathways
WP106: Alanine and aspartate metabolism
WP1165: G Protein Signaling Pathways
WP1371: G Protein Signaling Pathways
WP1438: Influenza A virus infection
WP1493: Carbon assimilation C4 pathway
WP1531: Vitamin D synthesis
WP1613: 1,4-Dichlorobenzene degradation
WP1616: ABC transporters
WP1624: Bacterial secretion system
WP1625: Base excision repair
WP1644: DNA replication
WP1650: Fluorobenzoate degradation
WP1654: gamma-Hexachlorocyclohexane degradation
WP1657: Glycerolipid metabolism
WP1659: Glycine, serine and threonine metabolism
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Related Genes :
[ttuA TT_C0106] tRNA-5-methyluridine(54) 2-sulfurtransferase (EC 2.8.1.15) (2-thiouridine synthetase TtuA) (tRNA two-thiouridine-synthesizing protein A)
[thiI DNK77_12025] tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[ttuC moeB TT_C0979] Sulfur carrier protein adenylyltransferase (E1-like protein TtuC) (Sulfur carrier protein MoaD adenylyltransferase) (EC 2.7.7.80) (Sulfur carrier protein ThiS adenylyltransferase) (EC 2.7.7.73) (Sulfur carrier protein TtuB adenylyltransferase) (EC 2.7.7.-) (tRNA two-thiouridine-synthesizing protein C)
[thiI COA66_03490] tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[thiI TAM4_1726] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[thiI PYWP30_01392] tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[uba4 cnxF NCU00736] Adenylyltransferase and sulfurtransferase uba4 (Common component for nitrate reductase and xanthine dehydrogenase protein F) (Ubiquitin-like protein activator 4) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase uba4); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase uba4) (Sulfur carrier protein MOCS2A sulfurtransferase)]
[thiI SAMN04487830_11761] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[thiI X276_19935] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[thiI MCAL106_0699 MCAL106E_0699 MCAL106L_0699 MCAL160E_0699 MCAL160L_0699] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[iscS nuvC yfhO yzzO b2530 JW2514] Cysteine desulfurase IscS (EC 2.8.1.7) (NifS protein homolog) (ThiI transpersulfidase) (TusA transpersulfidase)
[uba4 cnxF H072_3792] Adenylyltransferase and sulfurtransferase uba4 (Common component for nitrate reductase and xanthine dehydrogenase protein F) (Ubiquitin-like protein activator 4) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase uba4); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase uba4) (Sulfur carrier protein MOCS2A sulfurtransferase)]
[ttuA PH0300] tRNA-5-methyluridine(54) 2-sulfurtransferase (EC 2.8.1.-) (tRNA thiouridine synthetase TtuA)
[MOCS3 CNX5 UBA4] Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase MOCS3) (Sulfur carrier protein MOCS2A sulfurtransferase); Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase MOCS3)]
[MOCS3 CNX5 UBA4] Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase MOCS3) (Sulfur carrier protein MOCS2A sulfurtransferase); Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase MOCS3)]
[MOCS3 CNX5 UBA4] Adenylyltransferase and sulfurtransferase MOCS3 (Molybdenum cofactor synthesis protein 3) [Includes: Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfurtransferase MOCS3) (Sulfur carrier protein MOCS2A sulfurtransferase); Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Sulfur carrier protein MOCS2A adenylyltransferase) (Adenylyltransferase MOCS3)]
[atnM ANIA_07873] Fatty acid synthase beta subunit aflB (EC 2.3.1.86) (Aspercryptin biosynthesis cluster protein M) [Includes: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.59); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] malonyltransferase (EC 2.3.1.39); S-acyl fatty acid synthase thioesterase (EC 3.1.2.14)]
[ttuA TM_0197] tRNA-5-methyluridine(54) 2-sulfurtransferase (EC 2.8.1.-) (tRNA thiouridine synthetase TtuA)
[ttuB TT_C0105] Sulfur carrier protein TtuB (2-thiouridine synthesis sulfur carrier protein TtuB) (Ubiquitin-like S-donor protein TtuB) (Ubiquitin-like protein modifier TtuB) (tRNA two-thiouridine-synthesizing protein B)
[selU mnmH STM0513] tRNA 2-selenouridine/geranyl-2-thiouridine synthase (EC 2.5.1.-) (EC 2.9.1.-) (Selenophosphate-dependent tRNA 2-selenouridine synthase)
[thiI C3744_10855] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[selU ybbB b0503 JW0491] tRNA 2-selenouridine/geranyl-2-thiouridine synthase (EC 2.5.1.-) (EC 2.9.1.-) (Selenophosphate-dependent tRNA 2-selenouridine synthase) (tRNA 2-selenouridine synthase)
[hexB DOTSEDRAFT_181128] Fatty acid synthase beta subunit hexB (EC 2.3.1.86) (S-acyl fatty acid synthase thioesterase) (EC 3.1.2.14) [Includes: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.59); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] malonyltransferase (EC 2.3.1.39) (Dothistromin biosynthesis protein hexB)]
[cca b3056 JW3028] Multifunctional CCA protein [Includes: CCA-adding enzyme (EC 2.7.7.72) (CCA tRNA nucleotidyltransferase) (tRNA CCA-pyrophosphorylase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA nucleotidyltransferase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cyclic phosphodiesterase (EC 3.1.4.-); Phosphatase (EC 3.1.3.-)]
[thiI C3733_12845] Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase)
[STR1 MST1 RDH1 ST1 At1g79230 YUP8H12R.17] Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial (EC 2.8.1.1) (EC 2.8.1.2) (AtMST1) (Rhodanese homolog protein 1) (AtRDH1) (Sulfurtransferase 1) (AtStr1)
[gag-pol] Gag-Pol polyprotein (Pr160Gag-Pol) [Cleaved into: Matrix protein p17 (MA); Capsid protein p24 (CA); Spacer peptide 1 (SP1) (p2); Nucleocapsid protein p7 (NC); Transframe peptide (TF); p6-pol (p6*); Protease (EC 3.4.23.16) (PR) (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 2.7.7.7) (EC 3.1.26.13) (Exoribonuclease H) (EC 3.1.13.2) (p66 RT); p51 RT; p15; Integrase (IN) (EC 2.7.7.-) (EC 3.1.-.-)]
[rep 1a-1b] Replicase polyprotein 1ab (ORF1ab polyprotein) [Cleaved into: Nsp1 (EC 3.4.22.-); Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.19.12) (EC 3.4.22.-) (CP2) (CP); Non-structural protein 3 (Nsp3); Serine protease nsp4 (3CLSP) (EC 3.4.21.-) (3C-like serine proteinase) (Nsp4); Non-structural protein 5-6-7 (Nsp5-6-7); Non-structural protein 5 (Nsp5); Non-structural protein 6 (Nsp6); Non-structural protein 7-alpha (Nsp7-alpha); Non-structural protein 7-beta (Nsp7-beta); Non-structural protein 8 (Nsp8); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (Nsp9); Helicase nsp10 (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (Nsp10); Non-structural protein 11 (Nsp11); Non-structural protein 12 (Nsp12)]
[STR2 RDH2 At1g16460 F3O9.26] Thiosulfate/3-mercaptopyruvate sulfurtransferase 2 (EC 2.8.1.1) (EC 2.8.1.2) (Rhodanese homolog protein 2) (AtRDH2) (Sulfurtransferase 2) (AtStr2)

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